2gqw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:52, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2gqw.png|left|200px]]
 
-
<!--
+
==Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)==
-
The line below this paragraph, containing "STRUCTURE_2gqw", creates the "Structure Box" on the page.
+
<StructureSection load='2gqw' size='340' side='right'caption='[[2gqw]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2gqw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GQW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GQW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_2gqw| PDB=2gqw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gqw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gqw OCA], [https://pdbe.org/2gqw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gqw RCSB], [https://www.ebi.ac.uk/pdbsum/2gqw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gqw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q52437_PSES1 Q52437_PSES1]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17850818}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17850818 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/2gqw_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17850818}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2GQW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._kks102 Pseudomonas sp. kks102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GQW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gqw ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin., Senda M, Kishigami S, Kimura S, Fukuda M, Ishida T, Senda T, J Mol Biol. 2007 Oct 19;373(2):382-400. Epub 2007 Aug 19. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17850818 17850818]
+
</StructureSection>
-
[[Category: Pseudomonas sp. kks102]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Pseudomonas sp. KKS102]]
-
[[Category: Senda, M.]]
+
[[Category: Senda M]]
-
[[Category: Senda, T.]]
+
[[Category: Senda T]]
-
[[Category: Flavoprotein]]
+
-
[[Category: Oxidoreductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:20:33 2008''
+

Current revision

Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)

PDB ID 2gqw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools