This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1pyj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:33, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1pyj.png|left|200px]]
 
-
<!--
+
==Solution Structure of an O6-[4-oxo-4-(3-pyridyl)butyl]guanine adduct in an 11mer DNA duplex==
-
The line below this paragraph, containing "STRUCTURE_1pyj", creates the "Structure Box" on the page.
+
<StructureSection load='1pyj' size='340' side='right'caption='[[1pyj]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1pyj]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PYJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PYJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XPB:O6-[4-OXO-4-(3-PYRIDYL)BUTYL]-2-DEOXYGUANOSINE-5-MONOPHOSPHATE'>XPB</scene></td></tr>
-
{{STRUCTURE_1pyj| PDB=1pyj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pyj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pyj OCA], [https://pdbe.org/1pyj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pyj RCSB], [https://www.ebi.ac.uk/pdbsum/1pyj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pyj ProSAT]</span></td></tr>
-
 
+
</table>
-
===Solution Structure of an O6-[4-oxo-4-(3-pyridyl)butyl]guanine adduct in an 11mer DNA duplex===
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
<!--
+
[[Category: Broyde S]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_14609323}}, adds the Publication Abstract to the page
+
[[Category: Cosman M]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 14609323 is the PubMed ID number.
+
[[Category: Hingerty BE]]
-
-->
+
[[Category: Peterson LA]]
-
{{ABSTRACT_PUBMED_14609323}}
+
[[Category: Vu C]]
-
 
+
-
==About this Structure==
+
-
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PYJ OCA].
+
-
 
+
-
==Reference==
+
-
Solution structure of an O6-[4-oxo-4-(3-pyridyl)butyl]guanine adduct in an 11 mer DNA duplex: evidence for formation of a base triplex., Peterson LA, Vu C, Hingerty BE, Broyde S, Cosman M, Biochemistry. 2003 Nov 18;42(45):13134-44. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14609323 14609323]
+
-
[[Category: Broyde, S.]]
+
-
[[Category: Cosman, M.]]
+
-
[[Category: Hingerty, B E.]]
+
-
[[Category: Peterson, L A.]]
+
-
[[Category: Vu, C.]]
+
-
[[Category: Dna adduct]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:22:45 2008''
+

Current revision

Solution Structure of an O6-[4-oxo-4-(3-pyridyl)butyl]guanine adduct in an 11mer DNA duplex

PDB ID 1pyj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1pyj"
Personal tools