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1n5a

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(New page: 200px<br /><applet load="1n5a" size="450" color="white" frame="true" align="right" spinBox="true" caption="1n5a, resolution 2.85&Aring;" /> '''Crystal structure of...)
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[[Image:1n5a.gif|left|200px]]<br /><applet load="1n5a" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1n5a, resolution 2.85&Aring;" />
 
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'''Crystal structure of the Murine class I Major Histocompatibility Complex of H-2DB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV'''<br />
 
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==Overview==
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==Crystal structure of the Murine class I Major Histocompatibility Complex of H-2DB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV==
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LCMV infection of H-2(b) mice generates a CD8(+) CTL response mainly, directed toward three immunodominant epitopes. One of these, gp33, is, presented by both H-2D(b) and H-2K(b) MHC class I molecules. The virus can, escape immune recognition in the context of both these MHC class I, molecules through single mutations of the peptide. In order to understand, the underlying structural mechanism, we determined the crystal structures, of both complexes. The structures reveal that the peptide is presented in, two diametrically opposed manners by H-2D(b) and H-2K(b), with residues, used as anchor positions in one MHC class I molecule interacting with the, TCR in the other. Importantly, the peptide's N-terminal residue p1K, protrudes from the binding cleft in H-2K(b). We present structural, evidence that explains the functional consequences of single mutations, found in escape variants.
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<StructureSection load='1n5a' size='340' side='right'caption='[[1n5a]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1n5a]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Lymphocytic_choriomeningitis_mammarenavirus Lymphocytic choriomeningitis mammarenavirus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N5A FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5a OCA], [https://pdbe.org/1n5a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n5a RCSB], [https://www.ebi.ac.uk/pdbsum/1n5a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5a ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HA11_MOUSE HA11_MOUSE] Involved in the presentation of foreign antigens to the immune system.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n5/1n5a_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n5a ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1N5A is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1N5A OCA].
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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*[[MHC 3D structures|MHC 3D structures]]
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==Reference==
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*[[MHC I 3D structures|MHC I 3D structures]]
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A structural basis for LCMV immune evasion: subversion of H-2D(b) and H-2K(b) presentation of gp33 revealed by comparative crystal structure.Analyses., Achour A, Michaelsson J, Harris RA, Odeberg J, Grufman P, Sandberg JK, Levitsky V, Karre K, Sandalova T, Schneider G, Immunity. 2002 Dec;17(6):757-68. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12479822 12479822]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Lymphocytic choriomeningitis mammarenavirus]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Protein complex]]
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[[Category: Achour A]]
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[[Category: Achour, A.]]
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[[Category: Grufman P]]
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[[Category: Grufman, P.]]
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[[Category: Harris RA]]
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[[Category: Harris, R.A.]]
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[[Category: Karre K]]
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[[Category: Karre, K.]]
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[[Category: Levitsky V]]
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[[Category: Levitsky, V.]]
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[[Category: Michaelsson J]]
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[[Category: Michaelsson, J.]]
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[[Category: Odeberg J]]
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[[Category: Odeberg, J.]]
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[[Category: Sandalova T]]
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[[Category: Sandalova, T.]]
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[[Category: Sandberg JK]]
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[[Category: Sandberg, J.K.]]
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[[Category: Schneider G]]
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[[Category: Schneider, G.]]
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[[Category: immunodominant epitope]]
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[[Category: lcmv]]
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[[Category: murine mhc]]
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[[Category: viral escape]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:58:25 2007''
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Current revision

Crystal structure of the Murine class I Major Histocompatibility Complex of H-2DB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV

PDB ID 1n5a

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