This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1tm2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:42, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1tm2.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the apo form of the Salmonella typhimurium AI-2 receptor LsrB==
-
The line below this paragraph, containing "STRUCTURE_1tm2", creates the "Structure Box" on the page.
+
<StructureSection load='1tm2' size='340' side='right'caption='[[1tm2]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1tm2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TM2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tm2 OCA], [https://pdbe.org/1tm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tm2 RCSB], [https://www.ebi.ac.uk/pdbsum/1tm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tm2 ProSAT]</span></td></tr>
-
{{STRUCTURE_1tm2| PDB=1tm2 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal Structure of the apo form of the Salmonella typhimurium AI-2 receptor LsrB===
+
[https://www.uniprot.org/uniprot/LSRB_SALTY LSRB_SALTY] Part of the ABC transporter complex LsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the LsrC and LsrD permeases (Probable).<ref>PMID:11722742</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15350213}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15350213 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tm/1tm2_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_15350213}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tm2 ConSurf].
-
1TM2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium_lt2 Salmonella typhimurium lt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TM2 OCA].
+
<div style="clear:both"></div>
-
 
+
== References ==
-
==Reference==
+
<references/>
-
Salmonella typhimurium recognizes a chemically distinct form of the bacterial quorum-sensing signal AI-2., Miller ST, Xavier KB, Campagna SR, Taga ME, Semmelhack MF, Bassler BL, Hughson FM, Mol Cell. 2004 Sep 10;15(5):677-87. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15350213 15350213]
+
__TOC__
-
[[Category: Salmonella typhimurium lt2]]
+
</StructureSection>
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Bassler, B L.]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Campagna, S R.]]
+
[[Category: Bassler BL]]
-
[[Category: Hughson, F M.]]
+
[[Category: Campagna SR]]
-
[[Category: Miller, S T.]]
+
[[Category: Hughson FM]]
-
[[Category: Semmelhack, M F.]]
+
[[Category: Miller ST]]
-
[[Category: Taga, M E.]]
+
[[Category: Semmelhack MF]]
-
[[Category: Xavier, K B.]]
+
[[Category: Taga ME]]
-
[[Category: Periplasmic binding protein]]
+
[[Category: Xavier KB]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:50:24 2008''
+

Current revision

Crystal Structure of the apo form of the Salmonella typhimurium AI-2 receptor LsrB

PDB ID 1tm2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1tm2"
Personal tools