2fz2

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{{Seed}}
 
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[[Image:2fz2.png|left|200px]]
 
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==Structure of Turnip Yellow Mosaic Virus at 100 K==
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The line below this paragraph, containing "STRUCTURE_2fz2", creates the "Structure Box" on the page.
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<StructureSection load='2fz2' size='340' side='right'caption='[[2fz2]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2fz2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus_(Australian_isolate) Turnip yellow mosaic virus (Australian isolate)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FZ2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fz2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz2 OCA], [https://pdbe.org/2fz2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fz2 RCSB], [https://www.ebi.ac.uk/pdbsum/2fz2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fz2 ProSAT]</span></td></tr>
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{{STRUCTURE_2fz2| PDB=2fz2 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/COAT_TYMVA COAT_TYMVA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fz/2fz2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fz2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Difference electron density maps, based on structure factor amplitudes and experimental phases from crystals of wild-type turnip yellow mosaic virus and those of empty capsids prepared by freeze-thawing, show a large portion of the encapsidated RNA to have an icosahedral distribution. Four unique segments of base-paired, double-helical RNA, one to two turns in length, lie between 33-A and 101-A radius and are organized about either 2-fold or 5-fold icosahedral axes. In addition, single-stranded loops of RNA invade the pentameric and hexameric capsomeres where they contact the interior capsid surface. The remaining RNA, not seen in electron density maps, must serve as connecting links between these secondary structural elements and is likely icosahedrally disordered. The distribution of RNA observed crystallographically appears to be in agreement with models based on biochemical data and secondary structural analyses.
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===Structure of Turnip Yellow Mosaic Virus at 100 K===
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The RNA of turnip yellow mosaic virus exhibits icosahedral order.,Larson SB, Lucas RW, Greenwood A, McPherson A Virology. 2005 Apr 10;334(2):245-54. PMID:15780874<ref>PMID:15780874</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15780874}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2fz2" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15780874 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15780874}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2FZ2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus_(isolate_australia) Turnip yellow mosaic virus (isolate australia)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ2 OCA].
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[[Category: Larson SB]]
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[[Category: Lucas RW]]
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==Reference==
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[[Category: McPherson A]]
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The RNA of turnip yellow mosaic virus exhibits icosahedral order., Larson SB, Lucas RW, Greenwood A, McPherson A, Virology. 2005 Apr 10;334(2):245-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15780874 15780874]
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Crystal structure of turnip yellow mosaic virus., Canady MA, Larson SB, Day J, McPherson A, Nat Struct Biol. 1996 Sep;3(9):771-81. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8784351 8784351]
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Preliminary X-ray diffraction analysis of crystals of turnip yellow mosaic virus (TYMV)., Canady MA, Day J, McPherson A, Proteins. 1995 Jan;21(1):78-81. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7716173 7716173]
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Crystal structure of an empty capsid of turnip yellow mosaic virus., van Roon AM, Bink HH, Plaisier JR, Pleij CW, Abrahams JP, Pannu NS, J Mol Biol. 2004 Aug 27;341(5):1205-14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15321716 15321716]
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[[Category: Single protein]]
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[[Category: Larson, S B.]]
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[[Category: Lucas, R W.]]
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[[Category: McPherson, A.]]
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[[Category: Capsid protein]]
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[[Category: Coat protein]]
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[[Category: Icosahedral virus]]
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[[Category: Plant virus]]
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[[Category: Rna]]
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[[Category: Tymoviruse]]
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[[Category: Tymv]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:06:55 2008''
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Current revision

Structure of Turnip Yellow Mosaic Virus at 100 K

PDB ID 2fz2

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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