2vfl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:07, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2vfl.png|left|200px]]
 
-
<!--
+
==AKAP18 delta central domain - CMP==
-
The line below this paragraph, containing "STRUCTURE_2vfl", creates the "Structure Box" on the page.
+
<StructureSection load='2vfl' size='340' side='right'caption='[[2vfl]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2vfl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VFL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VFL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene></td></tr>
-
{{STRUCTURE_2vfl| PDB=2vfl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vfl OCA], [https://pdbe.org/2vfl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vfl RCSB], [https://www.ebi.ac.uk/pdbsum/2vfl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vfl ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vf/2vfl_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vfl ConSurf].
 +
<div style="clear:both"></div>
-
===AKAP18 DELTA CENTRAL DOMAIN- CMP===
+
==See Also==
-
 
+
*[[A-kinase anchor protein 3D structures|A-kinase anchor protein 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18082768}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 18082768 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_18082768}}
+
-
 
+
-
==About this Structure==
+
-
2VFL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VFL OCA].
+
-
 
+
-
==Reference==
+
-
AKAP18 contains a phosphoesterase domain that binds AMP., Gold MG, Smith FD, Scott JD, Barford D, J Mol Biol. 2008 Feb 1;375(5):1329-43. Epub 2007 Nov 22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18082768 18082768]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Barford, D.]]
+
[[Category: Barford D]]
-
[[Category: Gold, M G.]]
+
[[Category: Gold MG]]
-
[[Category: Scott, J D.]]
+
[[Category: Scott JD]]
-
[[Category: Smith, F D.]]
+
[[Category: Smith FD]]
-
[[Category: Akap]]
+
-
[[Category: Apo]]
+
-
[[Category: Camp]]
+
-
[[Category: Cmp]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Phosphoesterase]]
+
-
[[Category: Pka]]
+
-
[[Category: Scaffold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:16:01 2008''
+

Current revision

AKAP18 delta central domain - CMP

PDB ID 2vfl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools