1pw9

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{{Seed}}
 
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[[Image:1pw9.png|left|200px]]
 
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==High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D==
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The line below this paragraph, containing "STRUCTURE_1pw9", creates the "Structure Box" on the page.
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<StructureSection load='1pw9' size='340' side='right'caption='[[1pw9]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1pw9]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PW9 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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{{STRUCTURE_1pw9| PDB=1pw9 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pw9 OCA], [https://pdbe.org/1pw9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pw9 RCSB], [https://www.ebi.ac.uk/pdbsum/1pw9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pw9 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SFTPD_HUMAN SFTPD_HUMAN] Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moieties.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/1pw9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pw9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Lung surfactant protein D (SP-D) can directly interact with carbohydrate residues on pulmonary pathogens and allergens, stimulate immune cells, and manipulate cytokine and chemokine profiles during the immune response in the lungs. Therapeutic administration of rfhSP-D, a recombinant homotrimeric fragment of human SP-D comprising the alpha-helical coiled-coil neck plus three CRDs, protects mice against lung allergy and infection caused by the fungal pathogen Aspergillus fumigatus. The high resolution crystal structures of maltose-bound rfhSP-D to 1.4A, and of rfhSP-D to 1.6A, define the fine detail of the mode and nature of carbohydrate recognition and provide insights into how a small fragment of human SP-D can bind to allergens/antigens or whole pathogens, and at the same time recruit and engage effector cells and molecules of humoral immunity. A previously unreported calcium ion, located on the trimeric axis in a pore at the bottom of the funnel formed by the three CRDs and close to the neck-CRD interface, is coordinated by a triad of glutamate residues which are, to some extent, neutralised by their interactions with a triad of exposed lysine residues in the funnel. The spatial relationship between the neck and the CRDs is maintained internally by these lysine residues, and externally by a glutamine, which forms a pair of hydrogen-bonds within an external cleft at each neck-CRD interface. Structural links between the central pore and the cleft suggest a possible effector mechanism for immune cell surface receptor binding in the presence of bound, extended natural lipopolysaccharide and phospholipid ligands. The structural requirements for such an effector mechanism, involving both the trimeric framework for multivalent ligand binding and recognition sites formed from more than one subunit, are present in both native hSP-D and rfhSP-D, providing a possible explanation for the significant biological activity of rfhSP-D.
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===High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D===
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High-resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D.,Shrive AK, Tharia HA, Strong P, Kishore U, Burns I, Rizkallah PJ, Reid KB, Greenhough TJ J Mol Biol. 2003 Aug 8;331(2):509-23. PMID:12888356<ref>PMID:12888356</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_12888356}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1pw9" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 12888356 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12888356}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1PW9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PW9 OCA].
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==Reference==
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High-resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D., Shrive AK, Tharia HA, Strong P, Kishore U, Burns I, Rizkallah PJ, Reid KB, Greenhough TJ, J Mol Biol. 2003 Aug 8;331(2):509-23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12888356 12888356]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Burns, I.]]
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[[Category: Burns I]]
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[[Category: Greenhough, T J.]]
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[[Category: Greenhough TJ]]
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[[Category: Kishore, U.]]
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[[Category: Kishore U]]
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[[Category: Reid, K B.]]
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[[Category: Reid KB]]
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[[Category: Rizkallah, P J.]]
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[[Category: Rizkallah PJ]]
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[[Category: Shrive, A K.]]
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[[Category: Shrive AK]]
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[[Category: Strong, P.]]
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[[Category: Strong P]]
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[[Category: Tharia, H A.]]
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[[Category: Tharia HA]]
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[[Category: Alpha-helical coiled-coil]]
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[[Category: C-type lectin]]
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[[Category: Carbohydrate recognition domain]]
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[[Category: Collectin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:45:51 2008''
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Current revision

High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D

PDB ID 1pw9

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