1nnr

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(New page: 200px<br /><applet load="1nnr" size="450" color="white" frame="true" align="right" spinBox="true" caption="1nnr, resolution 2.25&Aring;" /> '''Crystal structure of...)
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[[Image:1nnr.gif|left|200px]]<br /><applet load="1nnr" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1nnr, resolution 2.25&Aring;" />
 
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'''Crystal structure of a probable fosfomycin resistance protein (PA1129) from Pseudomonas aeruginosa with sulfate present in the active site'''<br />
 
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==Overview==
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==Crystal structure of a probable fosfomycin resistance protein (PA1129) from Pseudomonas aeruginosa with sulfate present in the active site==
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Fosfomycin [(1R,2S)-epoxypropylphosphonic acid] is a simple phosphonate, found to have antibacterial activity against both Gram-positive and, Gram-negative microorganisms. Early resistance to the clinical use of the, antibiotic was linked to a plasmid-encoded resistance protein, FosA, that, catalyzes the addition of glutathione to the oxirane ring, rendering the, antibiotic inactive. Subsequent studies led to the discovery of a, genomically encoded homologue in the pathogen Pseudomonas aeruginosa. The, proteins are Mn(II)-dependent enzymes where the metal is proposed to act, as a Lewis acid stabilizing the negative charge that develops on the, oxirane oxygen in the transition state. Several simple phosphonates, including the antiviral compound phosphonoformate (K(i) = 0.4 +/- 0.1, microM, K(d) approximately 0.2 microM), are shown to be inhibitors of, FosA. The crystal structure of FosA from P. aeruginosa with, phosphonoformate bound in the active site has been determined at 0.95 A, resolution and reveals that the inhibitor forms a five-coordinate complex, with the Mn(II) center with a geometry similar to that proposed for the, transition state of the reaction. Binding studies show that, phosphonoformate has a near-diffusion-controlled on rate (k(on), approximately 10(7)-10(8) M(-1) s(-1)) and an off rate (k(off) = 5 s(-1)), that is slower than that for fosfomycin (k(off) = 30 s(-1)). Taken, together, these data suggest that the FosA-catalyzed reaction has a very, early transition state and phosphonoformate acts as a minimal transition, state analogue inhibitor.
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<StructureSection load='1nnr' size='340' side='right'caption='[[1nnr]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1nnr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NNR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nnr OCA], [https://pdbe.org/1nnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nnr RCSB], [https://www.ebi.ac.uk/pdbsum/1nnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nnr ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FOSA_PSEAE FOSA_PSEAE] Metalloglutathione transferase which confers resistance to fosfomycin by catalyzing the addition of glutathione to fosfomycin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nn/1nnr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nnr ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Fosfomycin [(1R,2S)-epoxypropylphosphonic acid] is a simple phosphonate found to have antibacterial activity against both Gram-positive and Gram-negative microorganisms. Early resistance to the clinical use of the antibiotic was linked to a plasmid-encoded resistance protein, FosA, that catalyzes the addition of glutathione to the oxirane ring, rendering the antibiotic inactive. Subsequent studies led to the discovery of a genomically encoded homologue in the pathogen Pseudomonas aeruginosa. The proteins are Mn(II)-dependent enzymes where the metal is proposed to act as a Lewis acid stabilizing the negative charge that develops on the oxirane oxygen in the transition state. Several simple phosphonates, including the antiviral compound phosphonoformate (K(i) = 0.4 +/- 0.1 microM, K(d) approximately 0.2 microM), are shown to be inhibitors of FosA. The crystal structure of FosA from P. aeruginosa with phosphonoformate bound in the active site has been determined at 0.95 A resolution and reveals that the inhibitor forms a five-coordinate complex with the Mn(II) center with a geometry similar to that proposed for the transition state of the reaction. Binding studies show that phosphonoformate has a near-diffusion-controlled on rate (k(on) approximately 10(7)-10(8) M(-1) s(-1)) and an off rate (k(off) = 5 s(-1)) that is slower than that for fosfomycin (k(off) = 30 s(-1)). Taken together, these data suggest that the FosA-catalyzed reaction has a very early transition state and phosphonoformate acts as a minimal transition state analogue inhibitor.
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==About this Structure==
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Phosphonoformate: a minimal transition state analogue inhibitor of the fosfomycin resistance protein, FosA.,Rigsby RE, Rife CL, Fillgrove KL, Newcomer ME, Armstrong RN Biochemistry. 2004 Nov 2;43(43):13666-73. PMID:15504029<ref>PMID:15504029</ref>
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1NNR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1] with MN and SO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1NNR OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Phosphonoformate: a minimal transition state analogue inhibitor of the fosfomycin resistance protein, FosA., Rigsby RE, Rife CL, Fillgrove KL, Newcomer ME, Armstrong RN, Biochemistry. 2004 Nov 2;43(43):13666-73. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15504029 15504029]
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</div>
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[[Category: Glutathione transferase]]
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<div class="pdbe-citations 1nnr" style="background-color:#fffaf0;"></div>
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[[Category: Pseudomonas aeruginosa pao1]]
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== References ==
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[[Category: Single protein]]
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<references/>
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[[Category: Armstrong, R.N.]]
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__TOC__
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[[Category: Newcomer, M.E.]]
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</StructureSection>
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[[Category: Pharris, R.E.]]
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[[Category: Large Structures]]
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[[Category: Rife, C.L.]]
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[[Category: Pseudomonas aeruginosa PAO1]]
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[[Category: MN]]
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[[Category: Armstrong RN]]
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[[Category: SO4]]
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[[Category: Newcomer ME]]
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[[Category: manganese binding]]
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[[Category: Pharris RE]]
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[[Category: potassium binding loop]]
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[[Category: Rife CL]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 22:24:53 2007''
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Current revision

Crystal structure of a probable fosfomycin resistance protein (PA1129) from Pseudomonas aeruginosa with sulfate present in the active site

PDB ID 1nnr

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