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2r1p

From Proteopedia

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{{Seed}}
 
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[[Image:2r1p.png|left|200px]]
 
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==OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A==
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The line below this paragraph, containing "STRUCTURE_2r1p", creates the "Structure Box" on the page.
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<StructureSection load='2r1p' size='340' side='right'caption='[[2r1p]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2r1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R1P FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=DPJ:O,O-DIETHYL+HYDROGEN+THIOPHOSPHATE'>DPJ</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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{{STRUCTURE_2r1p| PDB=2r1p | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r1p OCA], [https://pdbe.org/2r1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r1p RCSB], [https://www.ebi.ac.uk/pdbsum/2r1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r1p ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q93LD7_RHIRD Q93LD7_RHIRD]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r1/2r1p_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r1p ConSurf].
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<div style="clear:both"></div>
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===OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A===
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==See Also==
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*[[Phosphotriesterase 3D structures|Phosphotriesterase 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_18082180}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 18082180 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18082180}}
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==About this Structure==
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2R1P is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R1P OCA].
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==Reference==
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In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase., Jackson CJ, Foo JL, Kim HK, Carr PD, Liu JW, Salem G, Ollis DL, J Mol Biol. 2008 Feb 1;375(5):1189-96. Epub 2007 Nov 1. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18082180 18082180]
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[[Category: Agrobacterium tumefaciens]]
[[Category: Agrobacterium tumefaciens]]
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[[Category: Aryldialkylphosphatase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Carr PD]]
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[[Category: Carr, P D.]]
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[[Category: Foo JL]]
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[[Category: Foo, J L.]]
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[[Category: Jackson CJ]]
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[[Category: Jackson, C J.]]
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[[Category: Kim HK]]
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[[Category: Kim, H K.]]
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[[Category: Liu JW]]
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[[Category: Liu, J W.]]
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[[Category: Ollis DL]]
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[[Category: Ollis, D L.]]
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[[Category: Salem G]]
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[[Category: Salem, G.]]
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[[Category: Hydrolase]]
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[[Category: Metalloenzyme]]
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[[Category: Opda]]
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[[Category: Phosphotriesterase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 19:22:56 2008''
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Current revision

OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A

PDB ID 2r1p

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