2a9b

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{{Seed}}
 
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[[Image:2a9b.png|left|200px]]
 
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==Crystal structure of R138Q mutant of recombinant sulfite oxidase at resting state==
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The line below this paragraph, containing "STRUCTURE_2a9b", creates the "Structure Box" on the page.
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<StructureSection load='2a9b' size='340' side='right'caption='[[2a9b]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2a9b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A9B FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.503&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>
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{{STRUCTURE_2a9b| PDB=2a9b | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a9b OCA], [https://pdbe.org/2a9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a9b RCSB], [https://www.ebi.ac.uk/pdbsum/2a9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a9b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SUOX_CHICK SUOX_CHICK]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/2a9b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a9b ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Sulfite oxidase deficiency is a lethal genetic disease that results from defects either in the genes encoding proteins involved in molybdenum cofactor biosynthesis or in the sulfite oxidase gene itself. Several point mutations in the sulfite oxidase gene have been identified from patients suffering from this disease worldwide. Although detailed biochemical analyses have been carried out on these mutations, no structural data could be obtained because of problems in crystallizing recombinant human and rat sulfite oxidases and the failure to clone the chicken sulfite oxidase gene. We synthesized the gene for chicken sulfite oxidase de novo, working backward from the amino acid sequence of the native chicken liver enzyme by PCR amplification of a series of 72 overlapping primers. The recombinant protein displayed the characteristic absorption spectrum of sulfite oxidase and exhibited steady state and rapid kinetic parameters comparable with those of the tissue-derived enzyme. We solved the crystal structures of the wild type and the sulfite oxidase deficiency-causing R138Q (R160Q in humans) variant of recombinant chicken sulfite oxidase in the resting and sulfate-bound forms. Significant alterations in the substrate-binding pocket were detected in the structure of the mutant, and a comparison between the wild type and mutant protein revealed that the active site residue Arg-450 adopts different conformations in the presence and absence of bound sulfate. The size of the binding pocket is thereby considerably reduced, and its position relative to the cofactor is shifted, causing an increase in the distance of the sulfur atom of the bound sulfate to the molybdenum.
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===Crystal structure of R138Q mutant of recombinant sulfite oxidase at resting state===
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Structural insights into sulfite oxidase deficiency.,Karakas E, Wilson HL, Graf TN, Xiang S, Jaramillo-Busquets S, Rajagopalan KV, Kisker C J Biol Chem. 2005 Sep 30;280(39):33506-15. Epub 2005 Jul 27. PMID:16048997<ref>PMID:16048997</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2a9b" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Sulfite Oxidase|Sulfite Oxidase]]
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(as it appears on PubMed at http://www.pubmed.gov), where 16048997 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16048997}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2A9B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A9B OCA].
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==Reference==
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Structural insights into sulfite oxidase deficiency., Karakas E, Wilson HL, Graf TN, Xiang S, Jaramillo-Busquets S, Rajagopalan KV, Kisker C, J Biol Chem. 2005 Sep 30;280(39):33506-15. Epub 2005 Jul 27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16048997 16048997]
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[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Sulfite oxidase]]
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[[Category: Graf TN]]
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[[Category: Graf, T N.]]
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[[Category: Jaramillo-Busquets S]]
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[[Category: Jaramillo-Busquets, S.]]
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[[Category: Karakas E]]
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[[Category: Karakas, E.]]
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[[Category: Kisker C]]
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[[Category: Kisker, C.]]
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[[Category: Rajagopalan KV]]
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[[Category: Rajagopalan, K V.]]
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[[Category: Wilson HL]]
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[[Category: Wilson, H L.]]
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[[Category: Xiang S]]
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[[Category: Xiang, S.]]
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[[Category: Molybdenum]]
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[[Category: Molybdopterin]]
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[[Category: Mutant]]
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[[Category: R138q]]
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[[Category: R160q]]
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[[Category: Sulfite oxidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 20:36:49 2008''
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Current revision

Crystal structure of R138Q mutant of recombinant sulfite oxidase at resting state

PDB ID 2a9b

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