2jp1

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{{Seed}}
 
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[[Image:2jp1.png|left|200px]]
 
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==Solution structure of the alternative conformation of XCL1/Lymphotactin==
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The line below this paragraph, containing "STRUCTURE_2jp1", creates the "Structure Box" on the page.
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<StructureSection load='2jp1' size='340' side='right'caption='[[2jp1]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jp1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JP1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JP1 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jp1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jp1 OCA], [https://pdbe.org/2jp1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jp1 RCSB], [https://www.ebi.ac.uk/pdbsum/2jp1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jp1 ProSAT]</span></td></tr>
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{{STRUCTURE_2jp1| PDB=2jp1 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/XCL1_HUMAN XCL1_HUMAN] Chemotactic activity for lymphocytes but not for monocytes or neutrophils.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jp/2jp1_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jp1 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Proteins often have multiple functional states, which might not always be accommodated by a single fold. Lymphotactin (Ltn) adopts two distinct structures in equilibrium, one corresponding to the canonical chemokine fold consisting of a monomeric three-stranded beta-sheet and carboxyl-terminal helix. The second Ltn structure solved by NMR reveals a dimeric all-beta-sheet arrangement with no similarity to other known proteins. In physiological solution conditions, both structures are significantly populated and interconvert rapidly. Interconversion replaces long-range interactions that stabilize the chemokine fold with an entirely new set of tertiary and quaternary contacts. The chemokine-like Ltn conformation is a functional XCR1 agonist, but fails to bind heparin. In contrast, the alternative structure binds glycosaminoglycans with high affinity but fails to activate XCR1. Because each structural species displays only one of the two functional properties essential for activity in vivo, the conformational equilibrium is likely to be essential for the biological activity of lymphotactin. These results demonstrate that the functional repertoire and regulation of a single naturally occurring amino acid sequence can be expanded by access to a set of highly dissimilar native-state structures.
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===Solution structure of the alternative conformation of XCL1/Lymphotactin===
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Interconversion between two unrelated protein folds in the lymphotactin native state.,Tuinstra RL, Peterson FC, Kutlesa S, Elgin ES, Kron MA, Volkman BF Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5057-62. Epub 2008 Mar 25. PMID:18364395<ref>PMID:18364395</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18364395}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2jp1" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18364395 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18364395}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2JP1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JP1 OCA].
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==Reference==
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Interconversion between two unrelated protein folds in the lymphotactin native state., Tuinstra RL, Peterson FC, Kutlesa S, Elgin ES, Kron MA, Volkman BF, Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5057-62. Epub 2008 Mar 25. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18364395 18364395]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Peterson, F C.]]
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[[Category: Peterson FC]]
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[[Category: Tuinstra, R L.]]
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[[Category: Tuinstra RL]]
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[[Category: Volkman, B F.]]
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[[Category: Volkman BF]]
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[[Category: Chemokine]]
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[[Category: Cytokine]]
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[[Category: Lymphotactin]]
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[[Category: Protein folding]]
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[[Category: Structural rearrangement]]
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[[Category: Xcl1]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 21:26:45 2008''
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Current revision

Solution structure of the alternative conformation of XCL1/Lymphotactin

PDB ID 2jp1

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