This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sbe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:30, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1sbe.png|left|200px]]
 
-
<!--
+
==SOYBEAN AGGLUTININ FROM GLYCINE MAX==
-
The line below this paragraph, containing "STRUCTURE_1sbe", creates the "Structure Box" on the page.
+
<StructureSection load='1sbe' size='340' side='right'caption='[[1sbe]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1sbe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SBE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SBE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_1sbe| PDB=1sbe | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sbe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sbe OCA], [https://pdbe.org/1sbe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sbe RCSB], [https://www.ebi.ac.uk/pdbsum/1sbe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sbe ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LEC_SOYBN LEC_SOYBN] Binds GalNAc and galactose.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sb/1sbe_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sbe ConSurf].
 +
<div style="clear:both"></div>
-
===SOYBEAN AGGLUTININ FROM GLYCINE MAX===
+
==See Also==
-
 
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9398234}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 9398234 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_9398234}}
+
-
 
+
-
==About this Structure==
+
-
1SBE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SBE OCA].
+
-
 
+
-
==Reference==
+
-
X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin., Olsen LR, Dessen A, Gupta D, Sabesan S, Sacchettini JC, Brewer CF, Biochemistry. 1997 Dec 9;36(49):15073-80. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9398234 9398234]
+
[[Category: Glycine max]]
[[Category: Glycine max]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Brewer, C F.]]
+
[[Category: Brewer CF]]
-
[[Category: Dessen, A.]]
+
[[Category: Dessen A]]
-
[[Category: Gupta, D.]]
+
[[Category: Gupta D]]
-
[[Category: Olsen, L R.]]
+
[[Category: Olsen LR]]
-
[[Category: Sabesan, S.]]
+
[[Category: Sabesan S]]
-
[[Category: Sacchettini, J C.]]
+
[[Category: Sacchettini JC]]
-
[[Category: Agglutinin]]
+
-
[[Category: Lectin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 00:21:25 2008''
+

Current revision

SOYBEAN AGGLUTININ FROM GLYCINE MAX

PDB ID 1sbe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools