This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ref

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:21, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ref.png|left|200px]]
 
-
<!--
+
==Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula soaked with malonyl-CoA==
-
The line below this paragraph, containing "STRUCTURE_2ref", creates the "Structure Box" on the page.
+
<StructureSection load='2ref' size='340' side='right'caption='[[2ref]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ref]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Moorena_producens_19L Moorena producens 19L]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2REF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2REF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene></td></tr>
-
{{STRUCTURE_2ref| PDB=2ref | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ref FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ref OCA], [https://pdbe.org/2ref PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ref RCSB], [https://www.ebi.ac.uk/pdbsum/2ref PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ref ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula soaked with malonyl-CoA===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q6DNF2_9CYAN Q6DNF2_9CYAN]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17991863}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17991863 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/re/2ref_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17991863}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2REF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lyngbya_majuscula Lyngbya majuscula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2REF OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ref ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
GNAT-like strategy for polyketide chain initiation., Gu L, Geders TW, Wang B, Gerwick WH, Hakansson K, Smith JL, Sherman DH, Science. 2007 Nov 9;318(5852):970-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17991863 17991863]
+
</StructureSection>
-
[[Category: Lyngbya majuscula]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Moorena producens 19L]]
-
[[Category: Geders, T W.]]
+
[[Category: Geders TW]]
-
[[Category: Smith, J L.]]
+
[[Category: Smith JL]]
-
[[Category: Curacin]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: Gnat]]
+
-
[[Category: Loading]]
+
-
[[Category: Lyase]]
+
-
[[Category: Phosphopantetheine]]
+
-
[[Category: Polyketide synthase]]
+
-
[[Category: S-acetyltransferase]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 00:57:18 2008''
+

Current revision

Crystal structure of the loading GNATL domain of CurA from Lyngbya majuscula soaked with malonyl-CoA

PDB ID 2ref

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools