This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1u5x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:16, 3 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1u5x.png|left|200px]]
 
-
<!--
+
==Crystal structure of murine APRIL at pH 5.0==
-
The line below this paragraph, containing "STRUCTURE_1u5x", creates the "Structure Box" on the page.
+
<StructureSection load='1u5x' size='340' side='right'caption='[[1u5x]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1u5x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U5X FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u5x OCA], [https://pdbe.org/1u5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u5x RCSB], [https://www.ebi.ac.uk/pdbsum/1u5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u5x ProSAT]</span></td></tr>
-
{{STRUCTURE_1u5x| PDB=1u5x | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TNF13_MOUSE TNF13_MOUSE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u5x_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u5x ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of murine APRIL at pH 5.0===
+
==See Also==
-
 
+
*[[Tumor necrosis factor ligand superfamily 3D structures|Tumor necrosis factor ligand superfamily 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15451660}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15451660 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15451660}}
+
-
 
+
-
==About this Structure==
+
-
1U5X is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U5X OCA].
+
-
 
+
-
==Reference==
+
-
The crystal structure of a proliferation-inducing ligand, APRIL., Wallweber HJ, Compaan DM, Starovasnik MA, Hymowitz SG, J Mol Biol. 2004 Oct 15;343(2):283-90. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15451660 15451660]
+
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Single protein]]
+
[[Category: Compaan DM]]
-
[[Category: Compaan, D M.]]
+
[[Category: Hymowitz SG]]
-
[[Category: Hymowitz, S G.]]
+
[[Category: Starovasnik MA]]
-
[[Category: Starovasnik, M A.]]
+
[[Category: Wallweber HJ]]
-
[[Category: Wallweber, H J.]]
+
-
[[Category: Cytokine]]
+
-
[[Category: Jelly-roll]]
+
-
[[Category: Tnfsf]]
+
-
[[Category: Trimer]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 01:04:24 2008''
+

Current revision

Crystal structure of murine APRIL at pH 5.0

PDB ID 1u5x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1u5x"
Personal tools