1s3f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:28, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1s3f.png|left|200px]]
 
-
<!--
+
==Purine 2'-deoxyribosyltransferase + selenoinosine==
-
The line below this paragraph, containing "STRUCTURE_1s3f", creates the "Structure Box" on the page.
+
<StructureSection load='1s3f' size='340' side='right'caption='[[1s3f]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1s3f]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_helveticus Lactobacillus helveticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S3F FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SNI:9-(3,4-DIHYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-2-YL)-1,9-DIHYDRO-PURINE-6-THIONE'>SNI</scene></td></tr>
-
{{STRUCTURE_1s3f| PDB=1s3f | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s3f OCA], [https://pdbe.org/1s3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s3f RCSB], [https://www.ebi.ac.uk/pdbsum/1s3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s3f ProSAT]</span></td></tr>
-
 
+
</table>
-
===Purine 2'-deoxyribosyltransferase + selenoinosine===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8RLY5_LACHE Q8RLY5_LACHE]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_14992575}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14992575 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s3/1s3f_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_14992575}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1S3F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_helveticus Lactobacillus helveticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S3F OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s3f ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Structures of purine 2'-deoxyribosyltransferase, substrate complexes, and the ribosylated enzyme intermediate at 2.0 A resolution., Anand R, Kaminski PA, Ealick SE, Biochemistry. 2004 Mar 9;43(9):2384-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14992575 14992575]
+
</StructureSection>
[[Category: Lactobacillus helveticus]]
[[Category: Lactobacillus helveticus]]
-
[[Category: Nucleoside deoxyribosyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Anand R]]
-
[[Category: Anand, R.]]
+
[[Category: Ealick SE]]
-
[[Category: Ealick, S E.]]
+
[[Category: Kaminski PA]]
-
[[Category: Kaminski, P A.]]
+
-
[[Category: Selenoinosine complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 01:39:59 2008''
+

Current revision

Purine 2'-deoxyribosyltransferase + selenoinosine

PDB ID 1s3f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1s3f"
Personal tools