1ort

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(New page: 200px<br /><applet load="1ort" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ort, resolution 3.0&Aring;" /> '''ORNITHINE TRANSCARBAM...)
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[[Image:1ort.jpg|left|200px]]<br /><applet load="1ort" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ort, resolution 3.0&Aring;" />
 
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'''ORNITHINE TRANSCARBAMOYLASE FROM PSEUDOMONAS AERUGINOSA'''<br />
 
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==Overview==
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==ORNITHINE TRANSCARBAMOYLASE FROM PSEUDOMONAS AERUGINOSA==
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The crystal structure of the Glu-105--&gt;Gly mutant of catabolic ornithine, transcarbamoylase (OTCase; carbamoyl phosphate + L-ornithine =, orthophosphate + L-citrulline, EC 2.1.3.3) from Pseudomonas aeruginosa has, been determined at 3.0-A resolution. This mutant is blocked in the active, R (relaxed) state. The structure was solved by the molecular replacement, method, starting from a crude molecular model built from a trimer of the, catalytic subunit of another transcarbamoylase, the extensively studied, aspartate transcarbamoylase (ATCase) from Escherichia coli. This model was, used to generate initial low-resolution phases at 8-A resolution, which, were extended to 3-A by noncrystallographic symmetry averaging. Four phase, extensions were required to obtain an electron density map of very high, quality from which the final model was built. The structure, including, 4020 residues, has been refined to 3-A, and the current crystallographic R, value is 0.216. No solvent molecules have been added to the model. The, catabolic OTCase is a dodecamer composed of four trimers organized in a, tetrahedral manner. Each monomer is composed of two domains. The carbamoyl, phosphate binding domain shows a strong structural homology with the, equivalent ATCase part. In contrast, the other domain, mainly implicated, in the binding of the second substrate (ornithine for OTCase and aspartate, for ATCase) is poorly conserved. The quaternary structures of these two, allosteric transcarbamoylases are quite divergent: the E. coli ATCase has, pseudo-32 point-group symmetry, with six catalytic and six regulatory, chains; the catabolic OTCase has 23 point-group symmetry and only, catalytic chains. However, both enzymes display homotropic and, heterotropic cooperativity.
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<StructureSection load='1ort' size='340' side='right'caption='[[1ort]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ort]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ORT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ORT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ort FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ort OCA], [https://pdbe.org/1ort PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ort RCSB], [https://www.ebi.ac.uk/pdbsum/1ort PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ort ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/OTCC_PSEAE OTCC_PSEAE] Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.<ref>PMID:4962140</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/or/1ort_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ort ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1ORT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Active as [http://en.wikipedia.org/wiki/Ornithine_carbamoyltransferase Ornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.3 2.1.3.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ORT OCA].
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*[[Ornithine carbamoyltransferase 3D structures|Ornithine carbamoyltransferase 3D structures]]
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== References ==
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==Reference==
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<references/>
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Crystal structure of Pseudomonas aeruginosa catabolic ornithine transcarbamoylase at 3.0-A resolution: a different oligomeric organization in the transcarbamoylase family., Villeret V, Tricot C, Stalon V, Dideberg O, Proc Natl Acad Sci U S A. 1995 Nov 7;92(23):10762-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7479879 7479879]
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__TOC__
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[[Category: Ornithine carbamoyltransferase]]
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
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[[Category: Single protein]]
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[[Category: Dideberg O]]
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[[Category: Dideberg, O.]]
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[[Category: Villeret V]]
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[[Category: Villeret, V.]]
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[[Category: ornithine]]
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[[Category: transferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 23:08:21 2007''
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Current revision

ORNITHINE TRANSCARBAMOYLASE FROM PSEUDOMONAS AERUGINOSA

PDB ID 1ort

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