1z9j

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{{Seed}}
 
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[[Image:1z9j.png|left|200px]]
 
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==Photosynthetic Reaction Center from Rhodobacter sphaeroides==
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The line below this paragraph, containing "STRUCTURE_1z9j", creates the "Structure Box" on the page.
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<StructureSection load='1z9j' size='340' side='right'caption='[[1z9j]], [[Resolution|resolution]] 4.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1z9j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z9J FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCL:BACTERIOCHLOROPHYLL+A'>BCL</scene>, <scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
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{{STRUCTURE_1z9j| PDB=1z9j | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z9j OCA], [https://pdbe.org/1z9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z9j RCSB], [https://www.ebi.ac.uk/pdbsum/1z9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z9j ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z9/1z9j_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z9j ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Metals bound to proteins perform a number of crucial biological reactions, including the oxidation of water by a manganese cluster in photosystem II. Although evolutionarily related to photosystem II, bacterial reaction centers lack both a strong oxidant and a manganese cluster for mediating the multielectron and proton transfer needed for water oxidation. In this study, carboxylate residues were introduced by mutagenesis into highly oxidizing reaction centers at a site homologous to the manganese-binding site of photosystem II. In the presence of manganese, light-minus-dark difference optical spectra of reaction centers from the mutants showed a lack of the oxidized bacteriochlorophyll dimer, while the reduced primary quinone was still present, demonstrating that manganese was serving as a secondary electron donor. On the basis of these steady-state optical measurements, the mutant with the highest-affinity site had a dissociation constant of approximately 1 microM. For the highest-affinity mutant, a first-order rate with a lifetime of 12 ms was observed for the reduction of the oxidized bacteriochlorophyll dimer by the bound manganese upon exposure to light. The dependence of the amplitude of this component on manganese concentration yielded a dissociation constant of approximately 1 muM, similar to that observed in the steady-state measurements. The three-dimensional structure determined by X-ray diffraction of the mutant with the high-affinity site showed that the binding site contains a single bound manganese ion, three carboxylate groups (including two groups introduced by mutagenesis), a histidine residue, and a bound water molecule. These reaction centers illustrate the successful design of a redox active metal center in a protein complex.
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===Photosynthetic Reaction Center from Rhodobacter sphaeroides===
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Design of a redox-linked active metal site: manganese bound to bacterial reaction centers at a site resembling that of photosystem II.,Thielges M, Uyeda G, Camara-Artigas A, Kalman L, Williams JC, Allen JP Biochemistry. 2005 May 24;44(20):7389-94. PMID:15895982<ref>PMID:15895982</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15895982}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1z9j" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15895982 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15895982}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Cereibacter sphaeroides]]
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1Z9J is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z9J OCA].
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[[Category: Large Structures]]
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[[Category: Allen JP]]
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==Reference==
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[[Category: Camara-Artigas A]]
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Design of a redox-linked active metal site: manganese bound to bacterial reaction centers at a site resembling that of photosystem II., Thielges M, Uyeda G, Camara-Artigas A, Kalman L, Williams JC, Allen JP, Biochemistry. 2005 May 24;44(20):7389-94. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15895982 15895982]
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[[Category: Kalman L]]
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[[Category: Protein complex]]
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[[Category: Thielges M]]
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[[Category: Rhodobacter sphaeroides]]
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[[Category: Uyeda G]]
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[[Category: Allen, J P.]]
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[[Category: Williams JC]]
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[[Category: Camara-Artigas, A.]]
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[[Category: Kalman, L.]]
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[[Category: Thielges, M.]]
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[[Category: Uyeda, G.]]
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[[Category: Williams, J C.]]
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[[Category: Alpha helix]]
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[[Category: Membrane protein]]
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[[Category: Mutant]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:05:13 2008''
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Current revision

Photosynthetic Reaction Center from Rhodobacter sphaeroides

PDB ID 1z9j

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