1ws8

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{{Seed}}
 
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[[Image:1ws8.png|left|200px]]
 
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==Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)==
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The line below this paragraph, containing "STRUCTURE_1ws8", creates the "Structure Box" on the page.
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<StructureSection load='1ws8' size='340' side='right'caption='[[1ws8]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ws8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucurbita_pepo Cucurbita pepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WS8 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_1ws8| PDB=1ws8 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ws8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ws8 OCA], [https://pdbe.org/1ws8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ws8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ws8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ws8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MAVI_CUCPE MAVI_CUCPE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ws/1ws8_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ws8 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mavicyanin, a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini), is a member of the phytocyanin subfamily containing one polypeptide chain of 109 amino residues and an unusual type-I Cu site in which the copper ligands are His45, Cys86, His91, and Gln96. The crystal structures of oxidized and reduced mavicyanin were determined at 1.6 and 1.9 A resolution, respectively. Mavicyanin has a core structure of seven polypeptide beta-strands arranged as a beta-sandwich organized into two beta-sheets, and the structure considerably resembles that of stellacyanin from cucumber (CST) or cucumber basic protein (CBP). A flexible region was not observed on superimpositioning of the oxidized and reduced mavicyanin structures. However, the Cu(II)-epsilon-O-Gln96 bond length was extended by 0.47 A, and the Thr15 residue was rotated by 60.0 degrees and O-gamma1-Thr15 moved from a distance of 4.78 to 2.58 A from the ligand Gln96 forming a new hydrogen bond between O-gamma1-Thr15 and epsilon-O-Gln96 upon reduction. The reorganization of copper coordination geometry of mavicyanin upon reduction arouses reduction potential decreased above pH 8 [Battistuzzi et al. (2001) J. Inorg. Biochem. 83, 223-227]. The rotation of Thr15 and the hydrogen bonding with the ligand Gln96 may constitute structural evidence of the decrease in the reduction potential at high pH.
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===Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)===
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Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.,Xie Y, Inoue T, Miyamoto Y, Matsumura H, Kataoka K, Yamaguchi K, Nojini M, Suzuki S, Kai Y J Biochem. 2005 Apr;137(4):455-61. PMID:15858169<ref>PMID:15858169</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15858169}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1ws8" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15858169 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15858169}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1WS8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cucurbita_pepo Cucurbita pepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS8 OCA].
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==Reference==
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Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction., Xie Y, Inoue T, Miyamoto Y, Matsumura H, Kataoka K, Yamaguchi K, Nojini M, Suzuki S, Kai Y, J Biochem. 2005 Apr;137(4):455-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15858169 15858169]
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[[Category: Cucurbita pepo]]
[[Category: Cucurbita pepo]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Inoue, T.]]
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[[Category: Inoue T]]
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[[Category: Kai, Y.]]
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[[Category: Kai Y]]
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[[Category: Kunishige, K.]]
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[[Category: Kunishige K]]
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[[Category: Matsumura, H.]]
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[[Category: Matsumura H]]
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[[Category: Miyamoto, Y.]]
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[[Category: Miyamoto Y]]
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[[Category: Nojini, M.]]
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[[Category: Nojini M]]
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[[Category: Suzuki, S.]]
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[[Category: Suzuki S]]
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[[Category: Xie, Y.]]
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[[Category: Xie Y]]
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[[Category: Yamaguchi, K.]]
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[[Category: Yamaguchi K]]
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[[Category: Cupredoxin]]
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[[Category: Mavicyanin]]
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[[Category: Oxidized form]]
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[[Category: Phytocyanin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:39:18 2008''
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Current revision

Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)

PDB ID 1ws8

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