We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1ovn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1ovn" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ovn, resolution 1.90&Aring;" /> '''Crystal Structure an...)
Current revision (00:21, 21 November 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ovn.jpg|left|200px]]<br /><applet load="1ovn" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ovn, resolution 1.90&Aring;" />
 
-
'''Crystal Structure and Functional Analysis of Drosophila Wind-- a PDI-Related Protein'''<br />
 
-
==Overview==
+
==Crystal Structure and Functional Analysis of Drosophila Wind-- a PDI-Related Protein==
-
In the developing Drosophila melanogaster embryo, dorsal-ventral, patterning displays an absolute requirement for the product of the, essential windbeutel gene, Wind. In homozygous windbeutel mutant flies, dorsal-ventral patterning fails to initiate because of the failure of the, Golgi-resident proteoglycan-modifying protein, Pipe, to exit the, endoplasmic reticulum, and this leads to the death of the embryo. Here, we, describe the three-dimensional structure of Wind at 1.9-A resolution and, identify a candidate surface for interaction with Pipe. This represents, the first crystal structure of a eukaryotic protein-disulfide, isomerase-related protein of the endoplasmic reticulum to be described., The dimeric protein is composed of an N-terminal thioredoxin domain and a, C-terminal alpha-helical domain unique to protein-disulfide isomerase D, proteins. Although Wind carries a CXXC motif that is partially surface, accessible, this motif is redox inactive, and the cysteines are not, required for the targeting of Pipe to the Golgi. However, both domains are, required for targeting Pipe to the Golgi, and, although the mouse, homologue ERp28 cannot replace the function of Wind, exchange of the Wind, D-domain with that of ERp28 allows for efficient Golgi transport of Pipe.
+
<StructureSection load='1ovn' size='340' side='right'caption='[[1ovn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1ovn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OVN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OVN FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ovn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ovn OCA], [https://pdbe.org/1ovn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ovn RCSB], [https://www.ebi.ac.uk/pdbsum/1ovn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ovn ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ov/1ovn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ovn ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
In the developing Drosophila melanogaster embryo, dorsal-ventral patterning displays an absolute requirement for the product of the essential windbeutel gene, Wind. In homozygous windbeutel mutant flies, dorsal-ventral patterning fails to initiate because of the failure of the Golgi-resident proteoglycan-modifying protein, Pipe, to exit the endoplasmic reticulum, and this leads to the death of the embryo. Here, we describe the three-dimensional structure of Wind at 1.9-A resolution and identify a candidate surface for interaction with Pipe. This represents the first crystal structure of a eukaryotic protein-disulfide isomerase-related protein of the endoplasmic reticulum to be described. The dimeric protein is composed of an N-terminal thioredoxin domain and a C-terminal alpha-helical domain unique to protein-disulfide isomerase D proteins. Although Wind carries a CXXC motif that is partially surface accessible, this motif is redox inactive, and the cysteines are not required for the targeting of Pipe to the Golgi. However, both domains are required for targeting Pipe to the Golgi, and, although the mouse homologue ERp28 cannot replace the function of Wind, exchange of the Wind D-domain with that of ERp28 allows for efficient Golgi transport of Pipe.
-
==About this Structure==
+
Crystal structure and functional analysis of Drosophila Wind, a protein-disulfide isomerase-related protein.,Ma Q, Guo C, Barnewitz K, Sheldrick GM, Soling HD, Uson I, Ferrari DM J Biol Chem. 2003 Nov 7;278(45):44600-7. Epub 2003 Aug 26. PMID:12941941<ref>PMID:12941941</ref>
-
1OVN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster] with CS as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1OVN OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Crystal structure and functional analysis of Drosophila Wind, a protein-disulfide isomerase-related protein., Ma Q, Guo C, Barnewitz K, Sheldrick GM, Soling HD, Uson I, Ferrari DM, J Biol Chem. 2003 Nov 7;278(45):44600-7. Epub 2003 Aug 26. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12941941 12941941]
+
</div>
 +
<div class="pdbe-citations 1ovn" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Drosophila melanogaster]]
[[Category: Drosophila melanogaster]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Barnewitz, K.]]
+
[[Category: Barnewitz K]]
-
[[Category: Ferrari, D.M.]]
+
[[Category: Ferrari DM]]
-
[[Category: Guo, C.]]
+
[[Category: Guo C]]
-
[[Category: Ma, Q.]]
+
[[Category: Ma Q]]
-
[[Category: Sheldrick, G.M.]]
+
[[Category: Sheldrick GM]]
-
[[Category: Soling, H.D.]]
+
[[Category: Soling HD]]
-
[[Category: Uson, I.]]
+
[[Category: Uson I]]
-
[[Category: CS]]
+
-
[[Category: chaperone]]
+
-
[[Category: dorsal-ventral patterning]]
+
-
[[Category: pdi]]
+
-
[[Category: pdi-dbeta]]
+
-
[[Category: pipe]]
+
-
[[Category: protein disulfide isomerase]]
+
-
[[Category: wind]]
+
-
[[Category: windbeutel]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 23:14:05 2007''
+

Current revision

Crystal Structure and Functional Analysis of Drosophila Wind-- a PDI-Related Protein

PDB ID 1ovn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools