We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1yls

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:58, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1yls.png|left|200px]]
 
-
<!--
+
==Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene==
-
The line below this paragraph, containing "STRUCTURE_1yls", creates the "Structure Box" on the page.
+
<StructureSection load='1yls' size='340' side='right'caption='[[1yls]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1yls]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YLS FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSL:(D)-2-METHYLSELENYL-2-DEOXYCYTIDINE-5-PHOSPHATE'>CSL</scene>, <scene name='pdbligand=DAI:(3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A-TETRAHYDRO-4,9[1,2]-BENZENO-1H-BENZ[F]ISOINDOLE-1,3(2H)-DIONE'>DAI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UMS:2-METHYLSELENYL-2-DEOXYURIDINE-5-PHOSPHATE'>UMS</scene></td></tr>
-
{{STRUCTURE_1yls| PDB=1yls | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yls FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yls OCA], [https://pdbe.org/1yls PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yls RCSB], [https://www.ebi.ac.uk/pdbsum/1yls PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yls ProSAT]</span></td></tr>
 +
</table>
-
===Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene===
+
==See Also==
-
 
+
*[[Ribozyme 3D structures|Ribozyme 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15723077}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15723077 is the PubMed ID number.
+
[[Category: Dauter Z]]
-
-->
+
[[Category: Hobartner C]]
-
{{ABSTRACT_PUBMED_15723077}}
+
[[Category: Jaschke A]]
-
 
+
[[Category: Keiper S]]
-
==About this Structure==
+
[[Category: Malinina L]]
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLS OCA].
+
[[Category: Micura R]]
-
 
+
[[Category: Patel DJ]]
-
==Reference==
+
[[Category: Phan AT]]
-
Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation., Serganov A, Keiper S, Malinina L, Tereshko V, Skripkin E, Hobartner C, Polonskaia A, Phan AT, Wombacher R, Micura R, Dauter Z, Jaschke A, Patel DJ, Nat Struct Mol Biol. 2005 Mar;12(3):218-24. Epub 2005 Feb 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15723077 15723077]
+
[[Category: Polonskaia A]]
-
[[Category: Dauter, Z.]]
+
[[Category: Serganov A]]
-
[[Category: Hobartner, C.]]
+
[[Category: Skripkin E]]
-
[[Category: Jaschke, A.]]
+
[[Category: Tereshko V]]
-
[[Category: Keiper, S.]]
+
[[Category: Wombacher R]]
-
[[Category: Malinina, L.]]
+
-
[[Category: Micura, R.]]
+
-
[[Category: Patel, D J.]]
+
-
[[Category: Phan, A T.]]
+
-
[[Category: Polonskaia, A.]]
+
-
[[Category: Serganov, A.]]
+
-
[[Category: Skripkin, E.]]
+
-
[[Category: Tereshko, V.]]
+
-
[[Category: Wombacher, R.]]
+
-
[[Category: Carbon-carbon bond formation]]
+
-
[[Category: Catalytic mechanism]]
+
-
[[Category: Crystal structure]]
+
-
[[Category: Diels-alder reaction]]
+
-
[[Category: Ribozyme]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 03:05:01 2008''
+

Current revision

Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

PDB ID 1yls

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yls"
Personal tools