1oxr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1oxr" size="450" color="white" frame="true" align="right" spinBox="true" caption="1oxr, resolution 1.93&Aring;" /> '''Aspirin induces its ...)
Current revision (07:10, 30 October 2024) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1oxr.gif|left|200px]]<br /><applet load="1oxr" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1oxr, resolution 1.93&Aring;" />
 
-
'''Aspirin induces its Anti-inflammatory effects through its specific binding to Phospholipase A2: Crystal structure of the complex formed between Phospholipase A2 and Aspirin at 1.9A resolution'''<br />
 
-
==Overview==
+
==Aspirin induces its Anti-inflammatory effects through its specific binding to Phospholipase A2: Crystal structure of the complex formed between Phospholipase A2 and Aspirin at 1.9A resolution==
-
Phospholipase A2 is potentially an important target for structure-based, rational drug design. In order to determine the involvement of, phospholipase A2 in the action of non-steroidal anti-inflammatory drugs, (NSAIDs), the crystal structure of the complex formed between, phospholipase A2 and aspirin has been determined at 1.9 angstroms, resolution. The structure contains 915 protein atoms, 1 calcium ion, 13, atoms of aspirin and 105 water molecules. The observed electron density of, the aspirin molecule in the structure was of very high quality thus, allowing the precise determination of its atomic coordinates leading to, the clear description of its interactions with the enzyme. The structure, of the complex clearly shows that aspirin is literally embedded in the, hydrophobic environment of PLA2. It is so placed in the substrate binding, channel that it forms several important attractive interactions with, calcium ion, His 48 and Asp 49. Thus, the structure of the complex clearly, shows that aspirin occupies a favourable place in the specific binding, site of PLA2. The binding studies have shown that acetyl salicylate, (aspirin) binds to PLA2 enzyme specifically with a dissociation constant, of 6.4 x 10(-6) M. The structural details and binding data suggest that, the inhibition of PLA2 by aspirin is of pharmacological
+
<StructureSection load='1oxr' size='340' side='right'caption='[[1oxr]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1oxr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Naja_sagittifera Naja sagittifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXR FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AIN:2-(ACETYLOXY)BENZOIC+ACID'>AIN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxr OCA], [https://pdbe.org/1oxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxr RCSB], [https://www.ebi.ac.uk/pdbsum/1oxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PA2A3_NAJSG PA2A3_NAJSG] PLA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oxr ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Phospholipase A2 is potentially an important target for structure-based rational drug design. In order to determine the involvement of phospholipase A2 in the action of non-steroidal anti-inflammatory drugs (NSAIDs), the crystal structure of the complex formed between phospholipase A2 and aspirin has been determined at 1.9 angstroms resolution. The structure contains 915 protein atoms, 1 calcium ion, 13 atoms of aspirin and 105 water molecules. The observed electron density of the aspirin molecule in the structure was of very high quality thus allowing the precise determination of its atomic coordinates leading to the clear description of its interactions with the enzyme. The structure of the complex clearly shows that aspirin is literally embedded in the hydrophobic environment of PLA2. It is so placed in the substrate binding channel that it forms several important attractive interactions with calcium ion, His 48 and Asp 49. Thus, the structure of the complex clearly shows that aspirin occupies a favourable place in the specific binding site of PLA2. The binding studies have shown that acetyl salicylate (aspirin) binds to PLA2 enzyme specifically with a dissociation constant of 6.4 x 10(-6) M. The structural details and binding data suggest that the inhibition of PLA2 by aspirin is of pharmacological
-
==About this Structure==
+
Aspirin induces its anti-inflammatory effects through its specific binding to phospholipase A2: crystal structure of the complex formed between phospholipase A2 and aspirin at 1.9 angstroms resolution.,Singh RK, Ethayathulla AS, Jabeen T, Sharma S, Kaur P, Singh TP J Drug Target. 2005 Feb;13(2):113-9. PMID:15823962<ref>PMID:15823962</ref>
-
1OXR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Naja_sagittifera Naja sagittifera] with AIN and CA as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1OXR OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Aspirin induces its anti-inflammatory effects through its specific binding to phospholipase A2: crystal structure of the complex formed between phospholipase A2 and aspirin at 1.9 angstroms resolution., Singh RK, Ethayathulla AS, Jabeen T, Sharma S, Kaur P, Singh TP, J Drug Target. 2005 Feb;13(2):113-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15823962 15823962]
+
</div>
-
[[Category: Naja sagittifera]]
+
<div class="pdbe-citations 1oxr" style="background-color:#fffaf0;"></div>
-
[[Category: Phospholipase A(2)]]
+
-
[[Category: Single protein]]
+
-
[[Category: Ethayathulla, A.S.]]
+
-
[[Category: Jabeen, T.]]
+
-
[[Category: Kaur, P.]]
+
-
[[Category: Sharma, S.]]
+
-
[[Category: Singh, R.K.]]
+
-
[[Category: Singh, T.P.]]
+
-
[[Category: Srinivasan, A.]]
+
-
[[Category: AIN]]
+
-
[[Category: CA]]
+
-
[[Category: complex]]
+
-
[[Category: crystal structure]]
+
-
[[Category: naja naja sagittifera]]
+
-
[[Category: o-acetyl-oxy phenol]]
+
-
[[Category: pla2]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 23:16:59 2007''
+
==See Also==
 +
*[[Phospholipase A2 3D structures|Phospholipase A2 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Naja sagittifera]]
 +
[[Category: Ethayathulla AS]]
 +
[[Category: Jabeen T]]
 +
[[Category: Kaur P]]
 +
[[Category: Sharma S]]
 +
[[Category: Singh RK]]
 +
[[Category: Singh TP]]
 +
[[Category: Srinivasan A]]

Current revision

Aspirin induces its Anti-inflammatory effects through its specific binding to Phospholipase A2: Crystal structure of the complex formed between Phospholipase A2 and Aspirin at 1.9A resolution

PDB ID 1oxr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools