This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1pxz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:59, 17 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1pxz.png|left|200px]]
 
-
<!--
+
==1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen==
-
The line below this paragraph, containing "STRUCTURE_1pxz", creates the "Structure Box" on the page.
+
<StructureSection load='1pxz' size='340' side='right'caption='[[1pxz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1pxz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Juniperus_ashei Juniperus ashei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PXZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PXZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pxz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pxz OCA], [https://pdbe.org/1pxz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pxz RCSB], [https://www.ebi.ac.uk/pdbsum/1pxz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pxz ProSAT]</span></td></tr>
-
{{STRUCTURE_1pxz| PDB=1pxz | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen===
+
[https://www.uniprot.org/uniprot/PLY1_JUNAS PLY1_JUNAS] Has low pectate lyase activity.<ref>PMID:20559000</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15539389}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15539389 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/px/1pxz_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_15539389}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pxz ConSurf].
-
1PXZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Juniperus_ashei Juniperus ashei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PXZ OCA].
+
<div style="clear:both"></div>
-
 
+
== References ==
-
==Reference==
+
<references/>
-
Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core., Czerwinski EW, Midoro-Horiuti T, White MA, Brooks EG, Goldblum RM, J Biol Chem. 2005 Feb 4;280(5):3740-6. Epub 2004 Nov 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15539389 15539389]
+
__TOC__
 +
</StructureSection>
[[Category: Juniperus ashei]]
[[Category: Juniperus ashei]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Brooks, E G.]]
+
[[Category: Brooks EG]]
-
[[Category: Czerwinski, E W.]]
+
[[Category: Czerwinski EW]]
-
[[Category: Goldblum, R M.]]
+
[[Category: Goldblum RM]]
-
[[Category: Midoro-Horiuti, T.]]
+
[[Category: Midoro-Horiuti T]]
-
[[Category: White, M A.]]
+
[[Category: White MA]]
-
[[Category: Allergen]]
+
-
[[Category: Cedar pollen]]
+
-
[[Category: Parallel beta-helix]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 03:16:17 2008''
+

Current revision

1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

PDB ID 1pxz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1pxz"
Personal tools