This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2b0d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:15, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2b0d.png|left|200px]]
 
-
<!--
+
==EcoRV Restriction Endonuclease/GAATTC/Ca2+==
-
The line below this paragraph, containing "STRUCTURE_2b0d", creates the "Structure Box" on the page.
+
<StructureSection load='2b0d' size='340' side='right'caption='[[2b0d]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2b0d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B0D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_2b0d| PDB=2b0d | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b0d OCA], [https://pdbe.org/2b0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b0d RCSB], [https://www.ebi.ac.uk/pdbsum/2b0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b0d ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/T2E5_ECOLX T2E5_ECOLX] Recognizes the double-stranded sequence GATATC and cleaves after T-3.
-
===EcoRV Restriction Endonuclease/GAATTC/Ca2+===
+
==See Also==
-
 
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16236314}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 16236314 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_16236314}}
+
-
 
+
-
==About this Structure==
+
-
2B0D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B0D OCA].
+
-
 
+
-
==Reference==
+
-
Non-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC., Hiller DA, Rodriguez AM, Perona JJ, J Mol Biol. 2005 Nov 18;354(1):121-36. Epub 2005 Oct 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16236314 16236314]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Type II site-specific deoxyribonuclease]]
+
[[Category: Hiller DA]]
-
[[Category: Hiller, D A.]]
+
[[Category: Perona JJ]]
-
[[Category: Perona, J J.]]
+
[[Category: Rodriguez AM]]
-
[[Category: Rodriguez, A M.]]
+
-
[[Category: Indirect readout]]
+
-
[[Category: Noncognate]]
+
-
[[Category: Protein-nucleic acid recognition]]
+
-
[[Category: Restriction enzyme]]
+
-
[[Category: Substrate specificity]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 03:17:43 2008''
+

Current revision

EcoRV Restriction Endonuclease/GAATTC/Ca2+

PDB ID 2b0d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2b0d"
Personal tools