This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rjt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1rjt.png|left|200px]]
 
-
<!--
+
==NMR Structure of CXC Chemokine CXCL11/ITAC==
-
The line below this paragraph, containing "STRUCTURE_1rjt", creates the "Structure Box" on the page.
+
<StructureSection load='1rjt' size='340' side='right'caption='[[1rjt]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1rjt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RJT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rjt OCA], [https://pdbe.org/1rjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rjt RCSB], [https://www.ebi.ac.uk/pdbsum/1rjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rjt ProSAT]</span></td></tr>
-
{{STRUCTURE_1rjt| PDB=1rjt | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CXL11_HUMAN CXL11_HUMAN] Chemotactic for interleukin-activated T-cells but not unstimulated T-cells, neutrophils or monocytes. Induces calcium release in activated T-cells. Binds to CXCR3. May play an important role in CNS diseases which involve T-cell recruitment. May play a role in skin immune responses.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rj/1rjt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rjt ConSurf].
 +
<div style="clear:both"></div>
-
===NMR Structure of CXC Chemokine CXCL11/ITAC===
+
==See Also==
-
 
+
*[[C-X-C motif chemokine 3D structures|C-X-C motif chemokine 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15273303}}, adds the Publication Abstract to the page
+
[[Category: Homo sapiens]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15273303 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Booth V]]
-
{{ABSTRACT_PUBMED_15273303}}
+
[[Category: Clark-Lewis I]]
-
 
+
[[Category: Sykes BD]]
-
==About this Structure==
+
-
1RJT is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RJT OCA].
+
-
 
+
-
==Reference==
+
-
NMR structure of CXCR3 binding chemokine CXCL11 (ITAC)., Booth V, Clark-Lewis I, Sykes BD, Protein Sci. 2004 Aug;13(8):2022-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15273303 15273303]
+
-
[[Category: Single protein]]
+
-
[[Category: Booth, V.]]
+
-
[[Category: Clark-Lewis, I.]]
+
-
[[Category: Sykes, B D.]]
+
-
[[Category: Chemokine]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:15:05 2008''
+

Current revision

NMR Structure of CXC Chemokine CXCL11/ITAC

PDB ID 1rjt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools