This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2iic

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:03, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2iic.png|left|200px]]
 
-
<!--
+
==Calcium bound structure of alpha-11 giardin==
-
The line below this paragraph, containing "STRUCTURE_2iic", creates the "Structure Box" on the page.
+
<StructureSection load='2iic' size='340' side='right'caption='[[2iic]], [[Resolution|resolution]] 2.93&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2iic]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Giardia_intestinalis Giardia intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IIC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IIC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.93&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_2iic| PDB=2iic | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iic OCA], [https://pdbe.org/2iic PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iic RCSB], [https://www.ebi.ac.uk/pdbsum/2iic PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iic ProSAT]</span></td></tr>
-
 
+
</table>
-
===Calcium bound structure of alpha-11 giardin===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q4VPP2_GIAIN Q4VPP2_GIAIN]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17355882}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17355882 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ii/2iic_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17355882}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2IIC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Giardia_intestinalis Giardia intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IIC OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iic ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Apo and calcium-bound crystal structures of Alpha-11 giardin, an unusual annexin from Giardia lamblia., Pathuri P, Nguyen ET, Svard SG, Luecke H, J Mol Biol. 2007 Apr 27;368(2):493-508. Epub 2007 Feb 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17355882 17355882]
+
</StructureSection>
[[Category: Giardia intestinalis]]
[[Category: Giardia intestinalis]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Luecke, H.]]
+
[[Category: Luecke H]]
-
[[Category: Nguyen, E T.]]
+
[[Category: Nguyen ET]]
-
[[Category: Pathuri, P.]]
+
[[Category: Pathuri P]]
-
[[Category: Calcium-protein complex]]
+
-
[[Category: Helix-turn-helix]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:16:04 2008''
+

Current revision

Calcium bound structure of alpha-11 giardin

PDB ID 2iic

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2iic"
Personal tools