This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vxg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:47, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1vxg.png|left|200px]]
 
-
<!--
+
==NATIVE SPERM WHALE MYOGLOBIN==
-
The line below this paragraph, containing "STRUCTURE_1vxg", creates the "Structure Box" on the page.
+
<StructureSection load='1vxg' size='340' side='right'caption='[[1vxg]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1vxg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VXG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VXG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1vxg| PDB=1vxg | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vxg OCA], [https://pdbe.org/1vxg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vxg RCSB], [https://www.ebi.ac.uk/pdbsum/1vxg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vxg ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/1vxg_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vxg ConSurf].
 +
<div style="clear:both"></div>
-
===NATIVE SPERM WHALE MYOGLOBIN===
+
==See Also==
-
 
+
*[[Myoglobin 3D structures|Myoglobin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_8642596}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 8642596 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_8642596}}
+
-
 
+
-
==About this Structure==
+
-
1VXG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VXG OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structures of CO-, deoxy- and met-myoglobins at various pH values., Yang F, Phillips GN Jr, J Mol Biol. 1996 Mar 8;256(4):762-74. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8642596 8642596]
+
[[Category: Physeter catodon]]
[[Category: Physeter catodon]]
-
[[Category: Single protein]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Jr., G N.Phillips.]]
+
[[Category: Yang F]]
-
[[Category: Yang, F.]]
+
-
[[Category: Conformational change]]
+
-
[[Category: Oxygen storage]]
+
-
[[Category: Ph value]]
+
-
[[Category: Sperm whale myoglobin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:33:06 2008''
+

Current revision

NATIVE SPERM WHALE MYOGLOBIN

PDB ID 1vxg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1vxg"
Personal tools