1p4a

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(New page: 200px<br /><applet load="1p4a" size="450" color="white" frame="true" align="right" spinBox="true" caption="1p4a, resolution 2.22&Aring;" /> '''Crystal Structure of...)
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[[Image:1p4a.gif|left|200px]]<br /><applet load="1p4a" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1p4a, resolution 2.22&Aring;" />
 
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'''Crystal Structure of the PurR complexed with cPRPP'''<br />
 
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==Overview==
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==Crystal Structure of the PurR complexed with cPRPP==
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Bacillus subtilis PurR represses transcription of several genes involved, in purine synthesis, metabolism, and transport and cofactor synthesis., PurR binds specifically to DNAs containing an inverted repeat of a, 14-nucleotide "PurBox" located in the upstream control regions of genes in, the PurR regulon. Further biochemical investigation of the interaction of, PurR with a series of shortened upstream DNA fragments of the pur operon, determined the minimum length and specificity elements of the operator., The relative affinities of the two PurBoxes differ significantly, such, that upstream PurBox1 (-81 to -68 relative to the transcription start, site) is designated "strong" and downstream PurBox2 (-49 to -36) is, designated "weak." Two PurBoxes are required for high-affinity PurR, binding, and one of these must be strong. The shortest DNA construct with, high affinity for PurR is a 74-bp perfect palindrome in which weak PurBox2, and its flanking sequences are replaced by strong PurBox1 and flanking, sequences. Two PurR dimers bind to this symmetric construct., Phosphoribosylpyrophosphate (PRPP), the effector molecule that reduces, affinity of PurR for DNA, requires one weak PurBox in the DNA construct to, inhibit PurR binding. PRPP binds, as expected, to a PRPP-motif in PurR. A, tracks outside the central conserved CGAA sequence of the PurBox may, facilitate DNA bending, leading to a proposal for strong and weak, designations of PurBoxes in the control regions of other genes regulated, by PurR.
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<StructureSection load='1p4a' size='340' side='right'caption='[[1p4a]], [[Resolution|resolution]] 2.22&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1p4a]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P4A FirstGlance]. <br>
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1P4A is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with PCP as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1P4A OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.22&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCP:1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE'>PCP</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p4a OCA], [https://pdbe.org/1p4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p4a RCSB], [https://www.ebi.ac.uk/pdbsum/1p4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p4a ProSAT]</span></td></tr>
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Functional dissection of the Bacillus subtilis pur operator site., Bera AK, Zhu J, Zalkin H, Smith JL, J Bacteriol. 2003 Jul;185(14):4099-109. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12837784 12837784]
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PURR_BACSU PURR_BACSU] Controls the transcription of the pur operon for purine biosynthetic genes, binds to the control region of the operon. DNA binding is inhibited by 5-phosphoribosyl 1-pyrophosphate.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p4/1p4a_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p4a ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Bera, A.K.]]
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[[Category: Bera AK]]
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[[Category: Smith, J.L.]]
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[[Category: Smith JL]]
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[[Category: Zalkin, H.]]
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[[Category: Zalkin H]]
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[[Category: Zhu, J.]]
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[[Category: Zhu J]]
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[[Category: PCP]]
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[[Category: transcription]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 23:27:52 2007''
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Current revision

Crystal Structure of the PurR complexed with cPRPP

PDB ID 1p4a

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