This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2grm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:29, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2grm.png|left|200px]]
 
-
<!--
+
==Crystal structure of PrgX/iCF10 complex==
-
The line below this paragraph, containing "STRUCTURE_2grm", creates the "Structure Box" on the page.
+
<StructureSection load='2grm' size='340' side='right'caption='[[2grm]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2grm]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GRM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2grm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grm OCA], [https://pdbe.org/2grm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2grm RCSB], [https://www.ebi.ac.uk/pdbsum/2grm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2grm ProSAT]</span></td></tr>
-
{{STRUCTURE_2grm| PDB=2grm | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of PrgX/iCF10 complex===
+
[https://www.uniprot.org/uniprot/Q04114_ENTFL Q04114_ENTFL]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17038121}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17038121 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/2grm_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_17038121}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2grm ConSurf].
-
2GRM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRM OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Molecular basis for control of conjugation by bacterial pheromone and inhibitor peptides., Kozlowicz BK, Shi K, Gu ZY, Ohlendorf DH, Earhart CA, Dunny GM, Mol Microbiol. 2006 Nov;62(4):958-69. Epub 2006 Oct 13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17038121 17038121]
+
[[Category: Enterococcus faecalis]]
[[Category: Enterococcus faecalis]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Dunny, G M.]]
+
[[Category: Dunny GM]]
-
[[Category: Earhart, C A.]]
+
[[Category: Earhart CA]]
-
[[Category: Gu, Z Y.]]
+
[[Category: Gu ZY]]
-
[[Category: Kozlowicz, B K.]]
+
[[Category: Kozlowicz BK]]
-
[[Category: Ohlendorf, D H.]]
+
[[Category: Ohlendorf DH]]
-
[[Category: Shi, K.]]
+
[[Category: Shi K]]
-
[[Category: Inhibitor]]
+
-
[[Category: Receptor]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 05:02:35 2008''
+

Current revision

Crystal structure of PrgX/iCF10 complex

PDB ID 2grm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools