2auk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2auk.png|left|200px]]
 
-
<!--
+
==Structure of E. coli RNA polymerase beta' G/G' insert==
-
The line below this paragraph, containing "STRUCTURE_2auk", creates the "Structure Box" on the page.
+
<StructureSection load='2auk' size='340' side='right'caption='[[2auk]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2auk]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AUK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AUK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2auk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2auk OCA], [https://pdbe.org/2auk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2auk RCSB], [https://www.ebi.ac.uk/pdbsum/2auk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2auk ProSAT]</span></td></tr>
-
{{STRUCTURE_2auk| PDB=2auk | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RPOC_ECOLI RPOC_ECOLI] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.[HAMAP-Rule:MF_01322]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/au/2auk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2auk ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of E. coli RNA polymerase beta' G/G' insert===
+
==See Also==
-
 
+
*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16154587}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 16154587 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_16154587}}
+
-
 
+
-
==About this Structure==
+
-
2AUK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AUK OCA].
+
-
 
+
-
==Reference==
+
-
Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit., Chlenov M, Masuda S, Murakami KS, Nikiforov V, Darst SA, Mustaev A, J Mol Biol. 2005 Oct 14;353(1):138-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16154587 16154587]
+
-
[[Category: DNA-directed RNA polymerase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Chlenov, M.]]
+
[[Category: Chlenov M]]
-
[[Category: Darst, S A.]]
+
[[Category: Darst SA]]
-
[[Category: Masuda, S.]]
+
[[Category: Masuda S]]
-
[[Category: Murakami, K S.]]
+
[[Category: Murakami KS]]
-
[[Category: Mustaev, A.]]
+
[[Category: Mustaev A]]
-
[[Category: Nikiforov, V.]]
+
[[Category: Nikiforov V]]
-
[[Category: Sandwich-barrel hybrid motif]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 05:59:59 2008''
+

Current revision

Structure of E. coli RNA polymerase beta' G/G' insert

PDB ID 2auk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2auk"
Personal tools