2awo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:30, 23 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2awo.png|left|200px]]
 
-
<!--
+
==Crystal structure of the ADP-Mg-bound E. Coli MALK (Crystallized with ADP-Mg)==
-
The line below this paragraph, containing "STRUCTURE_2awo", creates the "Structure Box" on the page.
+
<StructureSection load='2awo' size='340' side='right'caption='[[2awo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2awo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AWO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AWO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_2awo| PDB=2awo | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2awo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2awo OCA], [https://pdbe.org/2awo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2awo RCSB], [https://www.ebi.ac.uk/pdbsum/2awo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2awo ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MALK_ECOLI MALK_ECOLI] Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aw/2awo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2awo ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
ATP-binding cassette (ABC) transporters couple ATP binding and hydrolysis to the movement of substances across the membrane; conformational changes clearly play an important role in the transporter mechanism. Previously, we have shown that a dimer of MalK, the ATPase subunit of the maltose transporter from Escherichia coli, undergoes a tweezers-like motion in a transport cycle. The MalK monomer consists of an N-terminal nucleotide binding domain and a C-terminal regulatory domain. The two nucleotide-binding domains in a dimer are either open or closed, depending on whether ATP is present, while the regulatory domains maintain contacts to hold the dimer together. In this work, the structure of MalK in a posthydrolysis state is presented, obtained by cocrystallizing MalK with ATP-Mg(2+). ATP was hydrolyzed in the crystallization drop, and ADP-Mg(2+) was found in the resulting crystal structure. In contrast to the ATP-bound form where two ATP molecules are buried in a closed interface between the nucleotide-binding domains, the two nucleotide-binding domains of the ADP-bound form are open, indicating that ADP, unlike ATP, cannot stabilize the closed form. This conclusion is further supported by oligomerization studies of MalK in solution. At low protein concentrations, ATP promotes dimerization of MalK, whereas ADP does not. The structures of dimeric MalK in the nucleotide-free, ATP-bound, and ADP-bound forms provide a framework for understanding the nature of the conformational changes that occur in an ATP-binding cassette transporter hydrolysis cycle, as well as how conformational changes in MalK are coupled to solute transport.
-
===Crystal structure of the ADP-Mg-bound E. Coli MALK (Crystallized with ADP-Mg)===
+
ATP hydrolysis is required to reset the ATP-binding cassette dimer into the resting-state conformation.,Lu G, Westbrooks JM, Davidson AL, Chen J Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):17969-74. Epub 2005 Dec 2. PMID:16326809<ref>PMID:16326809</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16326809}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2awo" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16326809 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_16326809}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Escherichia coli K-12]]
-
2AWO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AWO OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Chen J]]
-
==Reference==
+
[[Category: Davidson AL]]
-
ATP hydrolysis is required to reset the ATP-binding cassette dimer into the resting-state conformation., Lu G, Westbrooks JM, Davidson AL, Chen J, Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):17969-74. Epub 2005 Dec 2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16326809 16326809]
+
[[Category: Lu G]]
-
[[Category: Escherichia coli]]
+
[[Category: Westbrooks JM]]
-
[[Category: Maltose-transporting ATPase]]
+
-
[[Category: Single protein]]
+
-
[[Category: Chen, J.]]
+
-
[[Category: Davidson, A L.]]
+
-
[[Category: Lu, G.]]
+
-
[[Category: Westbrooks, J M.]]
+
-
[[Category: Atp-binding cassette]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 06:10:51 2008''
+

Current revision

Crystal structure of the ADP-Mg-bound E. Coli MALK (Crystallized with ADP-Mg)

PDB ID 2awo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools