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1pbt
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1pbt" size="450" color="white" frame="true" align="right" spinBox="true" caption="1pbt, resolution 1.70Å" /> '''The crystal structur...) |
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| - | [[Image:1pbt.gif|left|200px]]<br /><applet load="1pbt" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1pbt, resolution 1.70Å" /> | ||
| - | '''The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima'''<br /> | ||
| - | == | + | ==The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima== |
| - | + | <StructureSection load='1pbt' size='340' side='right'caption='[[1pbt]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | [[Category: | + | <table><tr><td colspan='2'>[[1pbt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PBT FirstGlance]. <br> |
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pbt OCA], [https://pdbe.org/1pbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pbt RCSB], [https://www.ebi.ac.uk/pdbsum/1pbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pbt ProSAT], [https://www.topsan.org/Proteins/MCSG/1pbt TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/6PGL_THEMA 6PGL_THEMA] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/1pbt_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pbt ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Thermotoga maritima]] | [[Category: Thermotoga maritima]] | ||
| - | [[Category: Edwards | + | [[Category: Edwards A]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | [[Category: Kim | + | [[Category: Kim Y]] |
| - | + | [[Category: Savchenko A]] | |
| - | [[Category: Savchenko | + | [[Category: Skarina T]] |
| - | [[Category: Skarina | + | |
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Current revision
The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima
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