1yhh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:57, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1yhh.png|left|200px]]
 
-
<!--
+
==Uncyclized precursor structure of S65A Y66S G67A GFP variant==
-
The line below this paragraph, containing "STRUCTURE_1yhh", creates the "Structure Box" on the page.
+
<StructureSection load='1yhh' size='340' side='right'caption='[[1yhh]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1yhh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YHH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YHH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yhh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yhh OCA], [https://pdbe.org/1yhh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yhh RCSB], [https://www.ebi.ac.uk/pdbsum/1yhh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yhh ProSAT]</span></td></tr>
-
{{STRUCTURE_1yhh| PDB=1yhh | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yh/1yhh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yhh ConSurf].
 +
<div style="clear:both"></div>
-
===Uncyclized precursor structure of S65A Y66S G67A GFP variant===
+
==See Also==
-
 
+
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15697221}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 15697221 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15697221}}
+
-
 
+
-
==About this Structure==
+
-
1YHH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YHH OCA].
+
-
 
+
-
==Reference==
+
-
Understanding GFP chromophore biosynthesis: controlling backbone cyclization and modifying post-translational chemistry., Barondeau DP, Kassmann CJ, Tainer JA, Getzoff ED, Biochemistry. 2005 Feb 15;44(6):1960-70. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15697221 15697221]
+
[[Category: Aequorea victoria]]
[[Category: Aequorea victoria]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Barondeau, D P.]]
+
[[Category: Barondeau DP]]
-
[[Category: Getzoff, E D.]]
+
[[Category: Getzoff ED]]
-
[[Category: Kassmann, C J.]]
+
[[Category: Kassmann CJ]]
-
[[Category: Tainer, J A.]]
+
[[Category: Tainer JA]]
-
[[Category: Chromophore]]
+
-
[[Category: Coil-to-helix]]
+
-
[[Category: Uncyclized]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 06:47:11 2008''
+

Current revision

Uncyclized precursor structure of S65A Y66S G67A GFP variant

PDB ID 1yhh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yhh"
Personal tools