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1pk5

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(New page: 200px<br /><applet load="1pk5" size="450" color="white" frame="true" align="right" spinBox="true" caption="1pk5, resolution 2.40&Aring;" /> '''Crystal structure of...)
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[[Image:1pk5.gif|left|200px]]<br /><applet load="1pk5" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1pk5, resolution 2.40&Aring;" />
 
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'''Crystal structure of the orphan nuclear receptor LRH-1'''<br />
 
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==Overview==
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==Crystal structure of the orphan nuclear receptor LRH-1==
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The orphan nuclear receptors SF-1 and LRH-1 are constitutively active, but, it remains uncertain whether their activation is hormone dependent. We, report the crystal structure of the LRH-1 ligand binding domain to 2.4 A, resolution and find the receptor to be a monomer that adopts an active, conformation with a large but empty hydrophobic pocket. Adding bulky side, chains into this pocket resulted in full or greater activity suggesting, that, while LRH-1 could accommodate potential ligands, these are, dispensable for basal activity. Constitutive LRH-1 activity appears to be, conferred by a distinct structural element consisting of an extended helix, 2 that provides an additional layer to the canonical LBD fold. Mutating, the conserved arginine in helix 2 reduced LRH-1 receptor activity and, coregulator recruitment, consistent with the partial loss-of-function, phenotype exhibited by an analogous SF-1 human mutant. These findings, illustrate an alternative structural strategy for nuclear receptor, stabilization in the absence of ligand binding.
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<StructureSection load='1pk5' size='340' side='right'caption='[[1pk5]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1pk5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PK5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PK5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pk5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pk5 OCA], [https://pdbe.org/1pk5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pk5 RCSB], [https://www.ebi.ac.uk/pdbsum/1pk5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pk5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NR5A2_MOUSE NR5A2_MOUSE] Binds to promoters containing the sequence element 5'-AACGACCGACCTTGAG-3'. Plays a role in the regulation of gene expression in liver and pancreas. May play a role in embryonic development (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pk/1pk5_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pk5 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The orphan nuclear receptors SF-1 and LRH-1 are constitutively active, but it remains uncertain whether their activation is hormone dependent. We report the crystal structure of the LRH-1 ligand binding domain to 2.4 A resolution and find the receptor to be a monomer that adopts an active conformation with a large but empty hydrophobic pocket. Adding bulky side chains into this pocket resulted in full or greater activity suggesting that, while LRH-1 could accommodate potential ligands, these are dispensable for basal activity. Constitutive LRH-1 activity appears to be conferred by a distinct structural element consisting of an extended helix 2 that provides an additional layer to the canonical LBD fold. Mutating the conserved arginine in helix 2 reduced LRH-1 receptor activity and coregulator recruitment, consistent with the partial loss-of-function phenotype exhibited by an analogous SF-1 human mutant. These findings illustrate an alternative structural strategy for nuclear receptor stabilization in the absence of ligand binding.
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==About this Structure==
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Structural basis for ligand-independent activation of the orphan nuclear receptor LRH-1.,Sablin EP, Krylova IN, Fletterick RJ, Ingraham HA Mol Cell. 2003 Jun;11(6):1575-85. PMID:12820970<ref>PMID:12820970</ref>
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1PK5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1PK5 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structural basis for ligand-independent activation of the orphan nuclear receptor LRH-1., Sablin EP, Krylova IN, Fletterick RJ, Ingraham HA, Mol Cell. 2003 Jun;11(6):1575-85. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12820970 12820970]
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</div>
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[[Category: Mus musculus]]
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<div class="pdbe-citations 1pk5" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Fletterick, R.J.]]
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[[Category: Ingraham, H.A.]]
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[[Category: Krylova, I.N.]]
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[[Category: Sablin, E.P.]]
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[[Category: ligand-binding domain]]
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[[Category: lrh-1]]
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[[Category: nuclear receptor]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 23:52:52 2007''
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==See Also==
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*[[Liver receptor homolog-1|Liver receptor homolog-1]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Fletterick RJ]]
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[[Category: Ingraham HA]]
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[[Category: Krylova IN]]
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[[Category: Sablin EP]]

Current revision

Crystal structure of the orphan nuclear receptor LRH-1

PDB ID 1pk5

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