This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wv5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:34, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1wv5.png|left|200px]]
 
-
<!--
+
==X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form==
-
The line below this paragraph, containing "STRUCTURE_1wv5", creates the "Structure Box" on the page.
+
<StructureSection load='1wv5' size='340' side='right'caption='[[1wv5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wv5]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WV5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2BT:2-O-BUTYL-THYMIDINE'>2BT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1wv5| PDB=1wv5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wv5 OCA], [https://pdbe.org/1wv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wv5 RCSB], [https://www.ebi.ac.uk/pdbsum/1wv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wv5 ProSAT]</span></td></tr>
-
 
+
</table>
-
===X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form===
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
<!--
+
[[Category: Egli M]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15966728}}, adds the Publication Abstract to the page
+
[[Category: Inamati GB]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15966728 is the PubMed ID number.
+
[[Category: Lesnik EA]]
-
-->
+
[[Category: Manoharam M]]
-
{{ABSTRACT_PUBMED_15966728}}
+
[[Category: Minasov G]]
-
 
+
[[Category: Owens SR]]
-
==About this Structure==
+
[[Category: Pallan PS]]
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WV5 OCA].
+
[[Category: Prakash TP]]
-
 
+
[[Category: Ross BS]]
-
==Reference==
+
[[Category: Teplova M]]
-
Probing the influence of stereoelectronic effects on the biophysical properties of oligonucleotides: comprehensive analysis of the RNA affinity, nuclease resistance, and crystal structure of ten 2'-O-ribonucleic acid modifications., Egli M, Minasov G, Tereshko V, Pallan PS, Teplova M, Inamati GB, Lesnik EA, Owens SR, Ross BS, Prakash TP, Manoharan M, Biochemistry. 2005 Jun 28;44(25):9045-57. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15966728 15966728]
+
[[Category: Tereshko V]]
-
[[Category: Egli, M.]]
+
-
[[Category: Inamati, G B.]]
+
-
[[Category: Lesnik, E A.]]
+
-
[[Category: Manoharam, M.]]
+
-
[[Category: Minasov, G.]]
+
-
[[Category: Owens, S R.]]
+
-
[[Category: Pallan, P S.]]
+
-
[[Category: Prakash, T P.]]
+
-
[[Category: Ross, B S.]]
+
-
[[Category: Teplova, M.]]
+
-
[[Category: Tereshko, V.]]
+
-
[[Category: Dna]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 09:18:50 2008''
+

Current revision

X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form

PDB ID 1wv5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1wv5"
Personal tools