1ps8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1ps8" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ps8, resolution 2.40&Aring;" /> '''Crystal Structure of...)
Current revision (09:46, 16 August 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ps8.jpg|left|200px]]<br /><applet load="1ps8" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ps8, resolution 2.40&Aring;" />
 
-
'''Crystal Structure of the R270K Mutant of Aspartate Semialdehyde dehydrogenase from Haemophilus influenzae'''<br />
 
-
==Overview==
+
==Crystal Structure of the R270K Mutant of Aspartate Semialdehyde dehydrogenase from Haemophilus influenzae==
-
The reversible dephosphorylation of beta-aspartyl phosphate to, L-aspartate-beta-semialdehyde (ASA) in the aspartate biosynthetic pathway, is catalyzed by aspartate-beta-semialdehyde dehydrogenase (ASADH). The, product of this reaction is a key intermediate in the biosynthesis of, diaminopimelic acid, an integral component of bacterial cell walls and a, metabolic precursor of lysine and also a precursor in the biosynthesis of, threonine, isoleucine and methionine. The structures of selected, Haemophilus influenzae ASADH mutants were determined in order to evaluate, the residues that are proposed to interact with the substrates ASA or, phosphate. The substrate Km values are not altered by replacement of, either an active-site arginine (Arg270) with a lysine or a putative, phosphate-binding group (Lys246) with an arginine. However, the, interaction of phosphate with the enzyme is adversely affected by, replacement of Arg103 with lysine and is significantly altered when a, neutral leucine is substituted at this position. A conservative Glu243 to, aspartate mutant does not alter either ASA or phosphate binding, but, instead results in an eightfold increase in the Km for the coenzyme NADP., Each of the mutations is shown to cause specific subtle active-site, structural alterations and each of these changes results in decreases in, catalytic efficiency ranging from significant (approximately 3% native, activity) to substantial (&lt;0.1% native activity).
+
<StructureSection load='1ps8' size='340' side='right'caption='[[1ps8]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1ps8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PS8 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ps8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ps8 OCA], [https://pdbe.org/1ps8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ps8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ps8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ps8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DHAS_HAEIN DHAS_HAEIN] Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.<ref>PMID:12071715</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/1ps8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ps8 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The reversible dephosphorylation of beta-aspartyl phosphate to L-aspartate-beta-semialdehyde (ASA) in the aspartate biosynthetic pathway is catalyzed by aspartate-beta-semialdehyde dehydrogenase (ASADH). The product of this reaction is a key intermediate in the biosynthesis of diaminopimelic acid, an integral component of bacterial cell walls and a metabolic precursor of lysine and also a precursor in the biosynthesis of threonine, isoleucine and methionine. The structures of selected Haemophilus influenzae ASADH mutants were determined in order to evaluate the residues that are proposed to interact with the substrates ASA or phosphate. The substrate Km values are not altered by replacement of either an active-site arginine (Arg270) with a lysine or a putative phosphate-binding group (Lys246) with an arginine. However, the interaction of phosphate with the enzyme is adversely affected by replacement of Arg103 with lysine and is significantly altered when a neutral leucine is substituted at this position. A conservative Glu243 to aspartate mutant does not alter either ASA or phosphate binding, but instead results in an eightfold increase in the Km for the coenzyme NADP. Each of the mutations is shown to cause specific subtle active-site structural alterations and each of these changes results in decreases in catalytic efficiency ranging from significant (approximately 3% native activity) to substantial (&lt;0.1% native activity).
-
==About this Structure==
+
The role of substrate-binding groups in the mechanism of aspartate-beta-semialdehyde dehydrogenase.,Blanco J, Moore RA, Faehnle CR, Coe DM, Viola RE Acta Crystallogr D Biol Crystallogr. 2004 Aug;60(Pt 8):1388-95. Epub 2004, Jul 21. PMID:15272161<ref>PMID:15272161</ref>
-
1PS8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Active as [http://en.wikipedia.org/wiki/Aspartate-semialdehyde_dehydrogenase Aspartate-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.11 1.2.1.11] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1PS8 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
The role of substrate-binding groups in the mechanism of aspartate-beta-semialdehyde dehydrogenase., Blanco J, Moore RA, Faehnle CR, Coe DM, Viola RE, Acta Crystallogr D Biol Crystallogr. 2004 Aug;60(Pt 8):1388-95. Epub 2004, Jul 21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15272161 15272161]
+
</div>
-
[[Category: Aspartate-semialdehyde dehydrogenase]]
+
<div class="pdbe-citations 1ps8" style="background-color:#fffaf0;"></div>
-
[[Category: Haemophilus influenzae]]
+
-
[[Category: Single protein]]
+
-
[[Category: Blanco, J.]]
+
-
[[Category: Coe, D.M.]]
+
-
[[Category: Faehnle, C.R.]]
+
-
[[Category: Moore, R.A.]]
+
-
[[Category: Viola, R.E.]]
+
-
[[Category: aspartate pathway]]
+
-
[[Category: aspartate semialdehyde dehydrogenase]]
+
-
[[Category: enzyme]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:04:45 2007''
+
==See Also==
 +
*[[Aspartate-semialdehyde dehydrogenase 3D structures|Aspartate-semialdehyde dehydrogenase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Haemophilus influenzae]]
 +
[[Category: Large Structures]]
 +
[[Category: Blanco J]]
 +
[[Category: Coe DM]]
 +
[[Category: Faehnle CR]]
 +
[[Category: Moore RA]]
 +
[[Category: Viola RE]]

Current revision

Crystal Structure of the R270K Mutant of Aspartate Semialdehyde dehydrogenase from Haemophilus influenzae

PDB ID 1ps8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools