1rb8

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{{Seed}}
 
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[[Image:1rb8.png|left|200px]]
 
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==The phiX174 DNA binding protein J in two different capsid environments.==
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The line below this paragraph, containing "STRUCTURE_1rb8", creates the "Structure Box" on the page.
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<StructureSection load='1rb8' size='340' side='right'caption='[[1rb8]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1rb8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_alpha3 Escherichia phage alpha3] and [https://en.wikipedia.org/wiki/Escherichia_virus_phiX174 Escherichia virus phiX174]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RB8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RB8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rb8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rb8 OCA], [https://pdbe.org/1rb8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rb8 RCSB], [https://www.ebi.ac.uk/pdbsum/1rb8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rb8 ProSAT]</span></td></tr>
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{{STRUCTURE_1rb8| PDB=1rb8 | SCENE= }}
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</table>
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== Function ==
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===The phiX174 DNA binding protein J in two different capsid environments.===
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[https://www.uniprot.org/uniprot/CAPSD_BPAL3 CAPSD_BPAL3] Assembles to form an icosahedral capsid with a T=1 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins F. Upon virus binding to host cell, one of the spikes dissociates from the capsid and the virus interacts with LPS through the exposed EF loops on the F proteins. After the genome had been ejected, the channel formed by the F proteins at the unique fivefold axis remains open.[UniProtKB:P03641]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 15046981 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rb/1rb8_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_15046981}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rb8 ConSurf].
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1RB8 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_alpha3 Enterobacteria phage alpha3] and [http://en.wikipedia.org/wiki/Enterobacteria_phage_phix174 Enterobacteria phage phix174]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RB8 OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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The phiX174 protein J mediates DNA packaging and viral attachment to host cells., Bernal RA, Hafenstein S, Esmeralda R, Fane BA, Rossmann MG, J Mol Biol. 2004 Apr 9;337(5):1109-22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15046981 15046981]
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[[Category: Escherichia phage alpha3]]
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[[Category: Enterobacteria phage alpha3]]
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[[Category: Escherichia virus phiX174]]
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[[Category: Enterobacteria phage phix174]]
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[[Category: Large Structures]]
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[[Category: Protein complex]]
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[[Category: Bernal RA]]
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[[Category: Bernal, R A.]]
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[[Category: Esmeralda R]]
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[[Category: Esmeralda, R.]]
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[[Category: Fane BA]]
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[[Category: Fane, B A.]]
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[[Category: Hafenstein S]]
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[[Category: Hafenstein, S.]]
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[[Category: Rossmann MG]]
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[[Category: Rossmann, M G.]]
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[[Category: Alpha3]]
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[[Category: Bacteriophage alpha3]]
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[[Category: Bacteriophage alpha3 chimera]]
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[[Category: Bacteriophage phix174]]
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[[Category: Icosahedral virus]]
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[[Category: Microviridae]]
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[[Category: Phix174]]
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[[Category: Three-dimentional structure]]
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[[Category: Virion]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 09:53:16 2008''
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Current revision

The phiX174 DNA binding protein J in two different capsid environments.

PDB ID 1rb8

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