1ud5

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{{Seed}}
 
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[[Image:1ud5.png|left|200px]]
 
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==Crystal structure of AmyK38 with rubidium ion==
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The line below this paragraph, containing "STRUCTURE_1ud5", creates the "Structure Box" on the page.
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<StructureSection load='1ud5' size='340' side='right'caption='[[1ud5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ud5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._KSM-K38 Bacillus sp. KSM-K38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UD5 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RB:RUBIDIUM+ION'>RB</scene></td></tr>
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{{STRUCTURE_1ud5| PDB=1ud5 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ud5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ud5 OCA], [https://pdbe.org/1ud5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ud5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ud5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ud5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q93I48_9BACI Q93I48_9BACI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ud/1ud5_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ud5 ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of AmyK38 with rubidium ion===
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==See Also==
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*[[Amylase 3D structures|Amylase 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_12719434}}, adds the Publication Abstract to the page
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[[Category: Bacillus sp. KSM-K38]]
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(as it appears on PubMed at http://www.pubmed.gov), where 12719434 is the PubMed ID number.
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[[Category: Large Structures]]
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[[Category: Fujihashi M]]
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{{ABSTRACT_PUBMED_12719434}}
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[[Category: Hagihara H]]
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[[Category: Ito S]]
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==About this Structure==
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[[Category: Kita A]]
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1UD5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UD5 OCA].
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[[Category: Miki K]]
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[[Category: Nonaka T]]
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==Reference==
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[[Category: Ozaki K]]
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Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites., Nonaka T, Fujihashi M, Kita A, Hagihara H, Ozaki K, Ito S, Miki K, J Biol Chem. 2003 Jul 4;278(27):24818-24. Epub 2003 Apr 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12719434 12719434]
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[[Category: Alpha-amylase]]
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[[Category: Bacteria]]
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[[Category: Single protein]]
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[[Category: Fujihashi, M.]]
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[[Category: Hagihara, H.]]
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[[Category: Ito, S.]]
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[[Category: Kita, A.]]
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[[Category: Miki, K.]]
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[[Category: Nonaka, T.]]
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[[Category: Ozaki, K.]]
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[[Category: Alkaline]]
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[[Category: Alpha-amylase]]
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[[Category: Calcium-free]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:06:34 2008''
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Current revision

Crystal structure of AmyK38 with rubidium ion

PDB ID 1ud5

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OCA

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