1njo

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{{Seed}}
 
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[[Image:1njo.png|left|200px]]
 
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==The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)==
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The line below this paragraph, containing "STRUCTURE_1njo", creates the "Structure Box" on the page.
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<StructureSection load='1njo' size='340' side='right'caption='[[1njo]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1njo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NJO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PPU:PUROMYCIN-5-MONOPHOSPHATE'>PPU</scene></td></tr>
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{{STRUCTURE_1njo| PDB=1njo | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1njo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1njo OCA], [https://pdbe.org/1njo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1njo RCSB], [https://www.ebi.ac.uk/pdbsum/1njo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1njo ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Crystal structures of tRNA mimics complexed with the large ribosomal subunit of Deinococcus radiodurans indicate that remote interactions determine the precise orientation of tRNA in the peptidyl-transferase center (PTC). The PTC tolerates various orientations of puromycin derivatives and its flexibility allows the conformational rearrangements required for peptide-bond formation. Sparsomycin binds to A2602 and alters the PTC conformation. H69, the intersubunit-bridge connecting the PTC and decoding site, may also participate in tRNA placement and translocation. A spiral rotation of the 3' end of the A-site tRNA around a 2-fold axis of symmetry identified within the PTC suggests a unified ribosomal machinery for peptide-bond formation, A-to-P-site translocation, and entrance of nascent proteins into the exit tunnel. Similar 2-fold related regions, detected in all known structures of large ribosomal subunits, indicate the universality of this mechanism.
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===The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)===
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Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression.,Bashan A, Agmon I, Zarivach R, Schluenzen F, Harms J, Berisio R, Bartels H, Franceschi F, Auerbach T, Hansen HA, Kossoy E, Kessler M, Yonath A Mol Cell. 2003 Jan;11(1):91-102. PMID:12535524<ref>PMID:12535524</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_12535524}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1njo" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 12535524 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12535524}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1NJO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NJO OCA].
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==Reference==
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Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression., Bashan A, Agmon I, Zarivach R, Schluenzen F, Harms J, Berisio R, Bartels H, Franceschi F, Auerbach T, Hansen HA, Kossoy E, Kessler M, Yonath A, Mol Cell. 2003 Jan;11(1):91-102. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12535524 12535524]
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[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Agmon, I.]]
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[[Category: Synthetic construct]]
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[[Category: Bartels, H.]]
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[[Category: Agmon I]]
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[[Category: Bashan, A.]]
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[[Category: Bartels H]]
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[[Category: Berisio, R.]]
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[[Category: Bashan A]]
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[[Category: Hansen, H A.]]
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[[Category: Berisio R]]
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[[Category: Harms, J M.]]
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[[Category: Hansen HA]]
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[[Category: Schluenzen, F.]]
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[[Category: Harms JM]]
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[[Category: Yonath, A.]]
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[[Category: Schluenzen F]]
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[[Category: Zarivatch, R.]]
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[[Category: Yonath A]]
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[[Category: Peptide bond formation]]
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[[Category: Zarivatch R]]
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[[Category: Peptidyl-transferase]]
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[[Category: Puromycin]]
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[[Category: Ribosome]]
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[[Category: Sparsomycin]]
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[[Category: Trna]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:08:14 2008''
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Current revision

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

PDB ID 1njo

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