Template:STRUCTURE 2fir

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

2fir, resolution 2.00Å ()

Ligands:

, , , , , , ,

Non-Standard Residues:

Gene:

F7 (Homo sapiens), F3 (Homo sapiens)

Activity:

Coagulation factor VIIa, with EC number 3.4.21.21

Related:

1dan, 2a2q, 2aer, 2b8o

Structural annotation:
Resources:	CATH : 2Firh02, 2Firh01, 2Firt02, 2Firt01 InterPro : Ipr001314, Ipr018114, Ipr001254, Ipr000742, Ipr000294, Ipr000152, Ipr018097, Ipr017857, Ipr013032, Ipr012224, Ipr009003, Ipr001881, Ipr016354, Ipr015373, Ipr013783, Ipr003961, Ipr001187 Pfam : PF00089, PF00008, PF00594, PF09294, PF01108 SCOP : d2firh1, d2firl1, d2firl3, d2firl2, d2firt1, d2firt2

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_2fir"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|2fir, resolution 2.00&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2fir]], [[Resolution|resolution]] 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:SUGAR+(FUCOSE)'>FUC</scene>, <scene name='pdbligand=GLC:SUGAR+(GLUCOSE)'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+|LIGAND= <scene name='pdbligand=0G7:D-PHENYLALANYL-N-[(3S)-6-CARBAMIMIDAMIDO-1-CHLORO-2-OXOHEXAN-3-YL]-L-PROLINAMIDE'>0G7</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Coagulation_factor_VIIa Coagulation factor VIIa], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.21 3.4.21.21] </span>
 |GENE= F7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]), F3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00211 PTS_IIA_fru], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK11109 PRK11109], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00367 PTS-HPr_like], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054 EGF_CA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00069 GLA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01108 Tissue_fac], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190 Tryp_SPc]</span>
 |RELATEDENTRY=[[1dan|1dan]], [[2a2q|2a2q]], [[2aer|2aer]], [[2b8o|2b8o]]
-|NONSTDRES=<scene name='pdbligand=ACL:DEOXY-CHLOROMETHYL-ARGININE'>ACL</scene>, <scene name='pdbligand=CGU:GAMMA-CARBOXY-GLUTAMIC+ACID'>CGU</scene>, <scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>
+|NONSTDRES=<scene name='pdbligand=CGU:GAMMA-CARBOXY-GLUTAMIC+ACID'>CGU</scene>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fir OCA], [http://www.ebi.ac.uk/pdbsum/2fir PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2fir RCSB]</span>
+|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fir OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fir RCSB], [http://www.ebi.ac.uk/pdbsum/2fir PDBsum]</span>
-|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=2firH02 2Firh02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=2firH01 2Firh01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=2firT02 2Firt02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=2firT01 2Firt01]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P08709 P08709], [http://ca.expasy.org/cgi-bin/niceprot.pl?P13726 P13726]</span>
+|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/2firH02 2Firh02], [http://www.cathdb.info/domain/2firH01 2Firh01], [http://www.cathdb.info/domain/2firT02 2Firt02], [http://www.cathdb.info/domain/2firT01 2Firt01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001314 Ipr001314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018114 Ipr018114], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001254 Ipr001254], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000742 Ipr000742], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000294 Ipr000294], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000152 Ipr000152], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018097 Ipr018097], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017857 Ipr017857], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013032 Ipr013032], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012224 Ipr012224], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009003 Ipr009003], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001881 Ipr001881], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR016354 Ipr016354], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015373 Ipr015373], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013783 Ipr013783], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003961 Ipr003961], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001187 Ipr001187]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00089 PF00089], [http://pfam.sanger.ac.uk/family?acc=PF00008 PF00008], [http://pfam.sanger.ac.uk/family?acc=PF00594 PF00594], [http://pfam.sanger.ac.uk/family?acc=PF09294 PF09294], [http://pfam.sanger.ac.uk/family?acc=PF01108 PF01108]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=133531 d2firh1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=133532 d2firl1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=133534 d2firl3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=133533 d2firl2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=133535 d2firt1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=133536 d2firt2]</span>
-|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=F7 F7], [http://www.genecards.org/cgi-bin/carddisp.pl?id=F3 F3]</span>
+|uPDB=2FIR|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_2fir_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_2fir_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_2fir_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_2fir_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 2fir

From Proteopedia

Current revision

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox