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2gdm

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{{Seed}}
 
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[[Image:2gdm.png|left|200px]]
 
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<!--
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==LEGHEMOGLOBIN (OXY)==
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The line below this paragraph, containing "STRUCTURE_2gdm", creates the "Structure Box" on the page.
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<StructureSection load='2gdm' size='340' side='right'caption='[[2gdm]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2gdm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdm 1gdm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GDM FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
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{{STRUCTURE_2gdm| PDB=2gdm | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gdm OCA], [https://pdbe.org/2gdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gdm RCSB], [https://www.ebi.ac.uk/pdbsum/2gdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gdm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/2gdm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gdm ConSurf].
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<div style="clear:both"></div>
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===LEGHEMOGLOBIN (OXY)===
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==See Also==
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*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_7643380}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 7643380 is the PubMed ID number.
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{{ABSTRACT_PUBMED_7643380}}
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==About this Structure==
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2GDM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdm 1gdm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDM OCA].
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==Reference==
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The structure of deoxy- and oxy-leghaemoglobin from lupin., Harutyunyan EH, Safonova TN, Kuranova IP, Popov AN, Teplyakov AV, Obmolova GV, Rusakov AA, Vainshtein BK, Dodson GG, Wilson JC, et al., J Mol Biol. 1995 Aug 4;251(1):104-15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7643380 7643380]
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[[Category: Lupinus luteus]]
[[Category: Lupinus luteus]]
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[[Category: Single protein]]
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[[Category: Dodson GG]]
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[[Category: Dodson, G G.]]
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[[Category: Harutyunyan EH]]
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[[Category: Harutyunyan, E H.]]
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[[Category: Kuranova IP]]
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[[Category: Kuranova, I P.]]
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[[Category: Obmolova GV]]
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[[Category: Obmolova, G V.]]
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[[Category: Perutz MF]]
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[[Category: Perutz, M F.]]
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[[Category: Popov AN]]
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[[Category: Popov, A N.]]
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[[Category: Rusakov AA]]
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[[Category: Rusakov, A A.]]
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[[Category: Safonova TN]]
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[[Category: Safonova, T N.]]
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[[Category: Teplyakov AV]]
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[[Category: Teplyakov, A V.]]
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[[Category: Wilson JC]]
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[[Category: Wilson, J C.]]
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[[Category: Leghemoglobin]]
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[[Category: Lupine]]
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[[Category: Oxygen transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:40:11 2008''
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Current revision

LEGHEMOGLOBIN (OXY)

PDB ID 2gdm

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