2d1p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:45, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2d1p.png|left|200px]]
 
-
<!--
+
==crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification==
-
The line below this paragraph, containing "STRUCTURE_2d1p", creates the "Structure Box" on the page.
+
<StructureSection load='2d1p' size='340' side='right'caption='[[2d1p]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2d1p]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D1P FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2d1p| PDB=2d1p | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d1p OCA], [https://pdbe.org/2d1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d1p RCSB], [https://www.ebi.ac.uk/pdbsum/2d1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d1p ProSAT]</span></td></tr>
-
 
+
</table>
-
===crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/TUSD_ECOLI TUSD_ECOLI] Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE.<ref>PMID:16387657</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16472754}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16472754 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/2d1p_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16472754}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2D1P is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D1P OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d1p ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex., Numata T, Fukai S, Ikeuchi Y, Suzuki T, Nureki O, Structure. 2006 Feb;14(2):357-66. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16472754 16472754]
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Fukai, S.]]
+
[[Category: Fukai S]]
-
[[Category: Ikeuchi, Y.]]
+
[[Category: Ikeuchi Y]]
-
[[Category: Numata, T.]]
+
[[Category: Numata T]]
-
[[Category: Nureki, O.]]
+
[[Category: Nureki O]]
-
[[Category: Suzuki, T.]]
+
[[Category: Suzuki T]]
-
[[Category: Structural genomic]]
+
-
[[Category: Sulfur transfer]]
+
-
[[Category: Trna modification]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:49:34 2008''
+

Current revision

crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification

PDB ID 2d1p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d1p"
Personal tools