2f87

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{{Seed}}
 
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[[Image:2f87.png|left|200px]]
 
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==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==
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The line below this paragraph, containing "STRUCTURE_2f87", creates the "Structure Box" on the page.
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<StructureSection load='2f87' size='340' side='right'caption='[[2f87]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [https://pdbe.org/2f87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [https://www.ebi.ac.uk/pdbsum/2f87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f87 ProSAT]</span></td></tr>
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{{STRUCTURE_2f87| PDB=2f87 | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The NMR structure of a 12-mer RNA derived from the helix 6 of SRP RNA from Pyrococcus furiosus, whose loop-closing base pair is U.G, was determined, and the structural and thermodynamic properties of the RNA were compared with those of a mutant RNA with the C:G closing base pair. Although the structures of the two RNAs are similar to each other and adopt the GNRR motif the conformational stabilities are significantly different to each other It was suggested that weaker stacking interaction of the GAAG loop with the U:G closing base pair in 12-mer RNA causes the lower conformational stability.
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===Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus===
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Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus.,Okada K, Takahashi M, Sakamoto T, Kawai G, Nakamura K, Kanai A Nucleosides Nucleotides Nucleic Acids. 2006;25(4-6):383-95. PMID:16838833<ref>PMID:16838833</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 2f87" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 16838833 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16838833}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA].
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[[Category: Kanai A]]
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[[Category: Kawai G]]
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==Reference==
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[[Category: Nakamura K]]
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Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus., Okada K, Takahashi M, Sakamoto T, Kawai G, Nakamura K, Kanai A, Nucleosides Nucleotides Nucleic Acids. 2006;25(4-6):383-95. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16838833 16838833]
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[[Category: Okada K]]
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[[Category: Kanai, A.]]
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[[Category: Sakamoto T]]
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[[Category: Kawai, G]]
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[[Category: Takahashi M]]
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[[Category: Nakamura, K.]]
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[[Category: Okada, K.]]
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[[Category: Sakamoto, T.]]
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[[Category: Takahashi, M.]]
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[[Category: Gnrr]]
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[[Category: Rna]]
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[[Category: Srp]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:57:46 2008''
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Current revision

Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus

PDB ID 2f87

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