1vrx

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{{Seed}}
 
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[[Image:1vrx.png|left|200px]]
 
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==Endocellulase e1 from acidothermus cellulolyticus mutant y245g==
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The line below this paragraph, containing "STRUCTURE_1vrx", creates the "Structure Box" on the page.
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<StructureSection load='1vrx' size='340' side='right'caption='[[1vrx]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1vrx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidothermus_cellulolyticus Acidothermus cellulolyticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1c0d 1c0d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VRX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vrx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vrx OCA], [https://pdbe.org/1vrx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vrx RCSB], [https://www.ebi.ac.uk/pdbsum/1vrx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vrx ProSAT]</span></td></tr>
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{{STRUCTURE_1vrx| PDB=1vrx | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GUN1_ACIC1 GUN1_ACIC1] Has a very high specific activity on carboxymethylcellulose.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/1vrx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vrx ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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&lt;When Tyr245 in endocellulase Cel5A from Acidothermus cellulolyticus was changed to Gly (Y245G) by designed mutation, the value of Ki for inhibition of the enzyme by the product cellobiose was increased more than 1480%. This reduction in product inhibition enabled the mutant enzyme (used in conjunction with Trichoderma reesei cellobiohydrolase-I) to release soluble sugars from biomass cellulose at a rate as much as 40% greater than that achieved by the wild-type (WT) enzyme. The mutant was designed on the basis of the previously published crystal structure of the WT enzyme/substrate complex (at a resolution of 2.4 A), which provided insights into the enzyme mechanism at the atomic level and identified Tyr245 as a key residue interacting with a leaving group. To determine the origin of the change in activity, the crystal structure of Y245G was solved at 2.4-A resolution to an R-factor of 0.19 (R-free = 0.25). To obtain additional information on the enzyme-product interactions, density functional calculations were performed on representative fragments of the WT Cel5A and Y245G. The combined results indicate that the loss of the platform (Y245G) and of a hydrogen bond (from a conformational change in Gln247) reduces the binding energy between product and enzyme by several kilo calories per mole. Both kinetic and structural analyses thus relate the increased enzymatic activity to reduced product inhibition.
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===Endocellulase e1 from acidothermus cellulolyticus mutant y245g===
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Catalytically enhanced endocellulase Cel5A from Acidothermus cellulolyticus.,Baker JO, McCarley JR, Lovett R, Yu CH, Adney WS, Rignall TR, Vinzant TB, Decker SR, Sakon J, Himmel ME Appl Biochem Biotechnol. 2005 Spring;121-124:129-48. PMID:15917594<ref>PMID:15917594</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<!--
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15917594}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1vrx" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15917594 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15917594}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1VRX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Acidothermus_cellulolyticus Acidothermus cellulolyticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1c0d 1c0d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRX OCA].
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==Reference==
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Catalytically enhanced endocellulase Cel5A from Acidothermus cellulolyticus., Baker JO, McCarley JR, Lovett R, Yu CH, Adney WS, Rignall TR, Vinzant TB, Decker SR, Sakon J, Himmel ME, Appl Biochem Biotechnol. 2005 Spring;121-124:129-48. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15917594 15917594]
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[[Category: Acidothermus cellulolyticus]]
[[Category: Acidothermus cellulolyticus]]
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[[Category: Cellulase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Adney WS]]
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[[Category: Adney, W S.]]
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[[Category: Baker JO]]
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[[Category: Baker, J O.]]
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[[Category: Decker SR]]
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[[Category: Decker, S R.]]
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[[Category: Himmel ME]]
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[[Category: Himmel, M E.]]
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[[Category: Lovett R]]
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[[Category: Lovett, R.]]
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[[Category: McCarley JR]]
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[[Category: McCarley, J R.]]
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[[Category: Rignall TR]]
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[[Category: Rignall, T R.]]
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[[Category: Sakon J]]
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[[Category: Sakon, J.]]
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[[Category: Vinzant TB]]
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[[Category: Vinzant, T B.]]
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[[Category: Yu CH]]
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[[Category: Yu, C H.]]
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[[Category: Alpha/beta barrel]]
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[[Category: Endo-1,4-beta-d-glucanase]]
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[[Category: Hydrolase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 14:05:00 2008''
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Current revision

Endocellulase e1 from acidothermus cellulolyticus mutant y245g

PDB ID 1vrx

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