1pku

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{{Seed}}
 
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[[Image:1pku.png|left|200px]]
 
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==Crystal Structure of Nucleoside Diphosphate Kinase from Rice==
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The line below this paragraph, containing "STRUCTURE_1pku", creates the "Structure Box" on the page.
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<StructureSection load='1pku' size='340' side='right'caption='[[1pku]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1pku]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PKU FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pku OCA], [https://pdbe.org/1pku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pku RCSB], [https://www.ebi.ac.uk/pdbsum/1pku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pku ProSAT]</span></td></tr>
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{{STRUCTURE_1pku| PDB=1pku | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NDK1_ORYSJ NDK1_ORYSJ] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. This NDK is microtubule-associated.[HAMAP-Rule:MF_00451]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pk/1pku_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pku ConSurf].
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<div style="clear:both"></div>
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===Crystal Structure of Nucleoside Diphosphate Kinase from Rice===
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==See Also==
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*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_15890279}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15890279 is the PubMed ID number.
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{{ABSTRACT_PUBMED_15890279}}
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==About this Structure==
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1PKU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PKU OCA].
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==Reference==
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Crystal structure of nucleoside diphosphate kinase required for coleoptile elongation in rice (Oryza sativa L.)., Huang JY, Chang T, Chang CY, Chen CJ, J Struct Biol. 2005 Jun;150(3):309-18. Epub 2005 Mar 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15890279 15890279]
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[[Category: Nucleoside-diphosphate kinase]]
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[[Category: Oryza sativa]]
[[Category: Oryza sativa]]
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[[Category: Single protein]]
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[[Category: Chang C-Y]]
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[[Category: Chang, C Y.]]
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[[Category: Chang T]]
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[[Category: Chang, T.]]
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[[Category: Chen C-J]]
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[[Category: Chen, C J.]]
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[[Category: Huang J-Y]]
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[[Category: Huang, J Y.]]
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[[Category: Nucleoside diphosphate kinase]]
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[[Category: Rice]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 14:12:18 2008''
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Current revision

Crystal Structure of Nucleoside Diphosphate Kinase from Rice

PDB ID 1pku

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