This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2h6e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:31, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2h6e.png|left|200px]]
 
-
<!--
+
==Crystal structure of the D-arabinose dehydrogenase from Sulfolobus solfataricus==
-
The line below this paragraph, containing "STRUCTURE_2h6e", creates the "Structure Box" on the page.
+
<StructureSection load='2h6e' size='340' side='right'caption='[[2h6e]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2h6e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus_P2 Saccharolobus solfataricus P2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H6E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H6E FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2h6e| PDB=2h6e | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h6e OCA], [https://pdbe.org/2h6e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h6e RCSB], [https://www.ebi.ac.uk/pdbsum/2h6e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h6e ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the D-arabinose dehydrogenase from Sulfolobus solfataricus===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q97YM2_SACS2 Q97YM2_SACS2]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17610898}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17610898 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h6/2h6e_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17610898}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2H6E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H6E OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2h6e ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Crystal structure and biochemical properties of the D-arabinose dehydrogenase from Sulfolobus solfataricus., Brouns SJ, Turnbull AP, Willemen HL, Akerboom J, van der Oost J, J Mol Biol. 2007 Aug 31;371(5):1249-60. Epub 2007 Jun 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17610898 17610898]
+
</StructureSection>
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Sulfolobus solfataricus]]
+
[[Category: Saccharolobus solfataricus P2]]
-
[[Category: Akerboom, J.]]
+
[[Category: Akerboom J]]
-
[[Category: Brouns, S J.J.]]
+
[[Category: Brouns SJJ]]
-
[[Category: Oost, J Van der.]]
+
[[Category: De Vos WM]]
-
[[Category: Turnbull, A P.]]
+
[[Category: Turnbull AP]]
-
[[Category: Vos, W M.De.]]
+
[[Category: Van der Oost J]]
-
[[Category: Willemen, H L.D M]]
+
[[Category: Willemen HLDM]]
-
[[Category: Medium chain alcohol dehydrogenase]]
+
-
[[Category: Rossman fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 14:20:43 2008''
+

Current revision

Crystal structure of the D-arabinose dehydrogenase from Sulfolobus solfataricus

PDB ID 2h6e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools