1yel

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{{Seed}}
 
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[[Image:1yel.png|left|200px]]
 
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==Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1==
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The line below this paragraph, containing "STRUCTURE_1yel", creates the "Structure Box" on the page.
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<StructureSection load='1yel' size='340' side='right'caption='[[1yel]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yel]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YEL FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yel FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yel OCA], [https://pdbe.org/1yel PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yel RCSB], [https://www.ebi.ac.uk/pdbsum/1yel PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yel ProSAT], [https://www.topsan.org/Proteins/CESG/1yel TOPSAN]</span></td></tr>
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{{STRUCTURE_1yel| PDB=1yel | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Y1664_ARATH Y1664_ARATH]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yel_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yel ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A novel DNA binding motif, the B3 domain, has been identified in a number of transcription factors specific to higher plant species, and was recently found to define a new protein fold. Here we report the second structure of a B3 domain, that of the Arabidopsis thaliana protein, At1g16640. As part of an effort to 'rescue' structural genomics targets deemed unsuitable for structure determination as full-length proteins, we applied a combined bioinformatic and experimental strategy to identify an optimal construct containing a predicted conserved domain. By screening a series of N- and C-terminally truncated At1g16640 fragments, we isolated a stable folded domain that met our criteria for structural analysis by NMR spectroscopy. The structure of the B3 domain of At1g16640 consists of a seven-stranded beta-sheet arranged in an open barrel and two short alpha-helices, one at each end of the barrel. While At1g16640 is quite distinct from previously characterized B3 domain proteins in terms of amino acid sequence similarity, it adopts the same novel fold that was recently revealed by the RAV1 B3 domain structure. However, putative DNA-binding elements conserved in B3 domains from the RAV, ARF, and ABI3/VP1 subfamilies are largely absent in At1g16640, perhaps suggesting that B3 domains could function in contexts other than transcriptional regulation.
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===Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1===
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Structure of the B3 domain from Arabidopsis thaliana protein At1g16640.,Waltner JK, Peterson FC, Lytle BL, Volkman BF Protein Sci. 2005 Sep;14(9):2478-83. Epub 2005 Aug 4. PMID:16081658<ref>PMID:16081658</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_16081658}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1yel" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 16081658 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_16081658}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1YEL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEL OCA].
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==Reference==
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Structure of the B3 domain from Arabidopsis thaliana protein At1g16640., Waltner JK, Peterson FC, Lytle BL, Volkman BF, Protein Sci. 2005 Sep;14(9):2478-83. Epub 2005 Aug 4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16081658 16081658]
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[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
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[[Category: Lytle BL]]
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[[Category: Lytle, B L.]]
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[[Category: Peterson FC]]
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[[Category: Peterson, F C.]]
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[[Category: Volkman BF]]
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[[Category: Volkman, B F.]]
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[[Category: Waltner JK]]
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[[Category: Waltner, J K.]]
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[[Category: Center for eukaryotic structural genomic]]
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[[Category: Cesg]]
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[[Category: Protein structure initiative]]
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[[Category: Psi]]
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[[Category: Structural genomic]]
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[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 14:43:16 2008''
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Current revision

Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1

PDB ID 1yel

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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