This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c3y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:04, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3c3y.png|left|200px]]
 
-
<!--
+
==Crystal Structure of PFOMT, Phenylpropanoid and Flavonoid O-methyltransferase from M. crystallinum==
-
The line below this paragraph, containing "STRUCTURE_3c3y", creates the "Structure Box" on the page.
+
<StructureSection load='3c3y' size='340' side='right'caption='[[3c3y]], [[Resolution|resolution]] 1.37&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c3y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesembryanthemum_crystallinum Mesembryanthemum crystallinum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C3Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.371&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
{{STRUCTURE_3c3y| PDB=3c3y | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c3y OCA], [https://pdbe.org/3c3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c3y RCSB], [https://www.ebi.ac.uk/pdbsum/3c3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c3y ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of PFOMT, Phenylpropanoid and Flavonoid O-methyltransferase from M. crystallinum===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q6YI95_MESCR Q6YI95_MESCR]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18342334}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18342334 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c3/3c3y_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_18342334}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3C3Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mesembryanthemum_crystallinum Mesembryanthemum crystallinum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C3Y OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c3y ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
Biochemical and Structural Analysis of Substrate Promiscuity in Plant Mg(2+)-Dependent O-Methyltransferases., Kopycki JG, Rauh D, Chumanevich AA, Neumann P, Vogt T, Stubbs MT, J Mol Biol. 2008 Feb 20;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18342334 18342334]
+
</StructureSection>
-
[[Category: Caffeoyl-CoA O-methyltransferase]]
+
[[Category: Large Structures]]
[[Category: Mesembryanthemum crystallinum]]
[[Category: Mesembryanthemum crystallinum]]
-
[[Category: Single protein]]
+
[[Category: Kopycki JG]]
-
[[Category: Kopycki, J G.]]
+
[[Category: Neumann P]]
-
[[Category: Neumann, P.]]
+
[[Category: Rauh D]]
-
[[Category: Rauh, D.]]
+
[[Category: Stubbs MT]]
-
[[Category: Stubbs, M T.]]
+
-
[[Category: O-methyltransferase]]
+
-
[[Category: Plant secondary metabolism]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 14:48:48 2008''
+

Current revision

Crystal Structure of PFOMT, Phenylpropanoid and Flavonoid O-methyltransferase from M. crystallinum

PDB ID 3c3y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools