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1qex

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(New page: 200px<br /><applet load="1qex" size="450" color="white" frame="true" align="right" spinBox="true" caption="1qex, resolution 2.30&Aring;" /> '''BACTERIOPHAGE T4 GEN...)
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[[Image:1qex.jpg|left|200px]]<br /><applet load="1qex" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1qex, resolution 2.30&Aring;" />
 
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'''BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR'''<br />
 
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==Overview==
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==BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR==
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BACKGROUND: The T4 bacteriophage consists of a head, filled with, double-stranded DNA, and a complex contractile tail required for the, ejection of the viral genome into the Escherichia coli host. The tail has, a baseplate to which are attached six long and six short tail fibers., These fibers are the sensing devices for recognizing the host. When, activated by attachment to cell receptors, the fibers cause a, conformational transition in the baseplate and subsequently in the tail, sheath, which initiates DNA ejection. The baseplate is a multisubunit, complex of proteins encoded by 15 genes. Gene product 9 (gp9) is the, protein that connects the long tail fibers to the baseplate and triggers, the tail contraction after virus attachment to a host cell. RESULTS: The, crystal structure of recombinant gp9, determined to 2.3 A resolution, shows that the protein of 288 amino acid residues assembles as a, homotrimer. The monomer consists of three domains: the N-terminal domain, generates a triple coiled coil; the middle domain is a mixed, seven-stranded beta sandwich with a topology not previously observed; and, the C-terminal domain is an eight-stranded, antiparallel beta sandwich, having some resemblance to 'jelly-roll' viral capsid protein structures., CONCLUSIONS: The biologically active form of gp9 is a trimer. The protein, contains flexible interdomain hinges, which are presumably required to, facilitate signal transmission between the long tail fibers and the, baseplate. Structural and genetic analyses show that the C-terminal domain, is bound to the baseplate, and the N-terminal coiled-coil domain is, associated with the long tail fibers.
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<StructureSection load='1qex' size='340' side='right'caption='[[1qex]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1qex]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QEX FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qex OCA], [https://pdbe.org/1qex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qex RCSB], [https://www.ebi.ac.uk/pdbsum/1qex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qex ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BP09_BPT4 BP09_BPT4] Baseplate protein that connects the long tail fibers to the baseplate and probably triggers the tail contraction after virus attachment to a host cell (PubMed:10545330). Involved in the tail assembly (PubMed:21129200).<ref>PMID:10545330</ref> <ref>PMID:21129200</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qe/1qex_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qex ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: The T4 bacteriophage consists of a head, filled with double-stranded DNA, and a complex contractile tail required for the ejection of the viral genome into the Escherichia coli host. The tail has a baseplate to which are attached six long and six short tail fibers. These fibers are the sensing devices for recognizing the host. When activated by attachment to cell receptors, the fibers cause a conformational transition in the baseplate and subsequently in the tail sheath, which initiates DNA ejection. The baseplate is a multisubunit complex of proteins encoded by 15 genes. Gene product 9 (gp9) is the protein that connects the long tail fibers to the baseplate and triggers the tail contraction after virus attachment to a host cell. RESULTS: The crystal structure of recombinant gp9, determined to 2.3 A resolution, shows that the protein of 288 amino acid residues assembles as a homotrimer. The monomer consists of three domains: the N-terminal domain generates a triple coiled coil; the middle domain is a mixed, seven-stranded beta sandwich with a topology not previously observed; and the C-terminal domain is an eight-stranded, antiparallel beta sandwich having some resemblance to 'jelly-roll' viral capsid protein structures. CONCLUSIONS: The biologically active form of gp9 is a trimer. The protein contains flexible interdomain hinges, which are presumably required to facilitate signal transmission between the long tail fibers and the baseplate. Structural and genetic analyses show that the C-terminal domain is bound to the baseplate, and the N-terminal coiled-coil domain is associated with the long tail fibers.
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==About this Structure==
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The structure of bacteriophage T4 gene product 9: the trigger for tail contraction.,Kostyuchenko VA, Navruzbekov GA, Kurochkina LP, Strelkov SV, Mesyanzhinov VV, Rossmann MG Structure. 1999 Oct 15;7(10):1213-22. PMID:10545330<ref>PMID:10545330</ref>
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1QEX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteriophage_t4 Bacteriophage t4] with EPE as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QEX OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The structure of bacteriophage T4 gene product 9: the trigger for tail contraction., Kostyuchenko VA, Navruzbekov GA, Kurochkina LP, Strelkov SV, Mesyanzhinov VV, Rossmann MG, Structure. 1999 Oct 15;7(10):1213-22. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10545330 10545330]
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</div>
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[[Category: Bacteriophage t4]]
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<div class="pdbe-citations 1qex" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Kostyuchenko, V.A.]]
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<references/>
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[[Category: Kurochkina, L.P.]]
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__TOC__
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[[Category: Mesyanzhinov, V.V.]]
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</StructureSection>
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[[Category: Navruzbekov, G.A.]]
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[[Category: Escherichia virus T4]]
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[[Category: Rossmann, M.G.]]
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[[Category: Large Structures]]
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[[Category: Strelkov, S.V.]]
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[[Category: Kostyuchenko VA]]
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[[Category: EPE]]
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[[Category: Kurochkina LP]]
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[[Category: bacteriophage t4]]
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[[Category: Mesyanzhinov VV]]
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[[Category: baseplate]]
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[[Category: Navruzbekov GA]]
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[[Category: gene product 9]]
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[[Category: Rossmann MG]]
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[[Category: oligomerization]]
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[[Category: Strelkov SV]]
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[[Category: x-ray crystallography]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:37:05 2007''
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Current revision

BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR

PDB ID 1qex

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