This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pel

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pel.png|left|200px]]
 
-
<!--
+
==PEANUT LECTIN==
-
The line below this paragraph, containing "STRUCTURE_2pel", creates the "Structure Box" on the page.
+
<StructureSection load='2pel' size='340' side='right'caption='[[2pel]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pel]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pel 1pel]. The April 2010 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Concanavalin A and Circular Permutation'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2010_4 10.2210/rcsb_pdb/mom_2010_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PEL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PEL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRD_900004:beta-lactose'>PRD_900004</scene>, <scene name='pdbligand=PRD_900008:alpha-lactose'>PRD_900008</scene></td></tr>
-
{{STRUCTURE_2pel| PDB=2pel | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pel FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pel OCA], [https://pdbe.org/2pel PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pel RCSB], [https://www.ebi.ac.uk/pdbsum/2pel PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pel ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY] D-galactose specific lectin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pe/2pel_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pel ConSurf].
 +
<div style="clear:both"></div>
-
===PEANUT LECTIN===
+
==See Also==
-
 
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
*[[Galactose-binding lectin|Galactose-binding lectin]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_8656429}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 8656429 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_8656429}}
+
-
 
+
-
==About this Structure==
+
-
2PEL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pel 1pel]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PEL OCA].
+
-
 
+
-
==Reference==
+
-
Conformation, protein-carbohydrate interactions and a novel subunit association in the refined structure of peanut lectin-lactose complex., Banerjee R, Das K, Ravishankar R, Suguna K, Surolia A, Vijayan M, J Mol Biol. 1996 Jun 7;259(2):281-96. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8656429 8656429]
+
[[Category: Arachis hypogaea]]
[[Category: Arachis hypogaea]]
-
[[Category: Single protein]]
+
[[Category: Concanavalin A and Circular Permutation]]
-
[[Category: Banerjee, R.]]
+
[[Category: Large Structures]]
-
[[Category: Das, K.]]
+
[[Category: RCSB PDB Molecule of the Month]]
-
[[Category: Ravishankar, R.]]
+
[[Category: Banerjee R]]
-
[[Category: Suguna, K.]]
+
[[Category: Das K]]
-
[[Category: Surolia, A.]]
+
[[Category: Ravishankar R]]
-
[[Category: Vijayan, M.]]
+
[[Category: Suguna K]]
-
[[Category: Agglutinin]]
+
[[Category: Surolia A]]
-
[[Category: Carbohydrate specificity]]
+
[[Category: Vijayan M]]
-
[[Category: Legume lectin]]
+
-
[[Category: Open quaternary structure]]
+
-
[[Category: Protein crystallography]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 14:58:23 2008''
+

Current revision

PEANUT LECTIN

PDB ID 2pel

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pel"
Personal tools