1qnu

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(New page: 200px<br /><applet load="1qnu" size="450" color="white" frame="true" align="right" spinBox="true" caption="1qnu, resolution 2.23&Aring;" /> '''SHIGA-LIKE TOXIN I B...)
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[[Image:1qnu.gif|left|200px]]<br /><applet load="1qnu" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1qnu, resolution 2.23&Aring;" />
 
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'''SHIGA-LIKE TOXIN I B SUBUNIT COMPLEXED WITH THE BRIDGED-STARFISH INHIBITOR'''<br />
 
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==Overview==
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==Shiga-Like Toxin I B Subunit Complexed with the Bridged-Starfish Inhibitor==
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The diseases caused by Shiga and cholera toxins account for the loss of, millions of lives each year. Both belong to the clinically significant, subset of bacterial AB5 toxins consisting of an enzymatically active A, subunit that gains entry to susceptible mammalian cells after, oligosaccharide recognition by the B5 homopentamer. Therapies might target, the obligatory oligosaccharide-toxin recognition event, but the low, intrinsic affinity of carbohydrate-protein interactions hampers the, development of low-molecular-weight inhibitors. The toxins circumvent low, affinity by binding simultaneously to five or more cell-surface, carbohydrates. Here we demonstrate the use of the crystal structure of the, B5 subunit of Escherichia coli O157:H7 Shiga-like toxin I (SLT-I) in, complex with an analogue of its carbohydrate receptor to design an, oligovalent, water-soluble carbohydrate ligand (named STARFISH), with, subnanomolar inhibitory activity. The in vitro inhibitory activity is, 1-10-million-fold higher than that of univalent ligands and is by far the, highest molar activity of any inhibitor yet reported for Shiga-like toxins, I and II. Crystallography of the STARFISH/Shiga-like toxin I complex, explains this activity. Two trisaccharide receptors at the tips of each of, five spacer arms simultaneously engage all five B subunits of two toxin, molecules.
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<StructureSection load='1qnu' size='340' side='right'caption='[[1qnu]], [[Resolution|resolution]] 2.23&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1qnu]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QNU FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.23&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EMB:METHYL-CARBAMIC+ACID+ETHYL+ESTER'>EMB</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MEC:ETHYL-CARBAMIC+ACID+METHYL+ESTER'>MEC</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qnu OCA], [https://pdbe.org/1qnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qnu RCSB], [https://www.ebi.ac.uk/pdbsum/1qnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qnu ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/V5URS0_9CAUD V5URS0_9CAUD] The B subunit is responsible for the binding of the holotoxin to specific receptors on the target cell surface, such as globotriaosylceramide (Gb3) in human intestinal microvilli.[ARBA:ARBA00003218]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qn/1qnu_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qnu ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The diseases caused by Shiga and cholera toxins account for the loss of millions of lives each year. Both belong to the clinically significant subset of bacterial AB5 toxins consisting of an enzymatically active A subunit that gains entry to susceptible mammalian cells after oligosaccharide recognition by the B5 homopentamer. Therapies might target the obligatory oligosaccharide-toxin recognition event, but the low intrinsic affinity of carbohydrate-protein interactions hampers the development of low-molecular-weight inhibitors. The toxins circumvent low affinity by binding simultaneously to five or more cell-surface carbohydrates. Here we demonstrate the use of the crystal structure of the B5 subunit of Escherichia coli O157:H7 Shiga-like toxin I (SLT-I) in complex with an analogue of its carbohydrate receptor to design an oligovalent, water-soluble carbohydrate ligand (named STARFISH), with subnanomolar inhibitory activity. The in vitro inhibitory activity is 1-10-million-fold higher than that of univalent ligands and is by far the highest molar activity of any inhibitor yet reported for Shiga-like toxins I and II. Crystallography of the STARFISH/Shiga-like toxin I complex explains this activity. Two trisaccharide receptors at the tips of each of five spacer arms simultaneously engage all five B subunits of two toxin molecules.
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==About this Structure==
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Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands.,Kitov PI, Sadowska JM, Mulvey G, Armstrong GD, Ling H, Pannu NS, Read RJ, Bundle DR Nature. 2000 Feb 10;403(6770):669-72. PMID:10688205<ref>PMID:10688205</ref>
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1QNU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteriophage_h30,_bacteriophaurce_3 Bacteriophage h30, bacteriophaurce 3] with EMB and MEC as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QNU OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands., Kitov PI, Sadowska JM, Mulvey G, Armstrong GD, Ling H, Pannu NS, Read RJ, Bundle DR, Nature. 2000 Feb 10;403(6770):669-72. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10688205 10688205]
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</div>
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[[Category: Bacteriophage h30, bacteriophaurce 3]]
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<div class="pdbe-citations 1qnu" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Hayakawa, K.]]
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[[Category: Pannu, N.S.]]
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[[Category: Read, R.J.]]
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[[Category: EMB]]
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[[Category: MEC]]
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[[Category: multivalent protein-carbohydrate recognition]]
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[[Category: ob-fold]]
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[[Category: subnanomolar inhibitor]]
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[[Category: toxin]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:50:12 2007''
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==See Also==
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*[[Shiga toxin 3D structures|Shiga toxin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli O157:H7]]
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[[Category: Large Structures]]
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[[Category: Hayakawa K]]
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[[Category: Pannu NS]]
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[[Category: Read RJ]]

Current revision

Shiga-Like Toxin I B Subunit Complexed with the Bridged-Starfish Inhibitor

PDB ID 1qnu

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